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GO:0050792regulation of viral processPMID:5038044IMP: Inferred from Mutant Phenotype P
This annotation made on page: 9CAUD:W0TUZ2
By: Robins3 (group Team Green-B) on 2017-04-05 10:44:07 CDT.




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Entry TypeChallenging User,GroupTime/DateChallenge ReasonPoints/Assessment
ChallengeDR25773,
Team Purple-B
2017-04-10 10:49:44 CDT

incorrect PubMed ID; correct ID is PMID: 27422842

2
Public
Assessment
Scaruso2017-05-21 15:38:59 CDT

This is the same GO ID, PMID, Evidence code, and Aspect as another annotation, which you can't do, though I would (and did indicate you should in the other annotation) change the GO code to "GO:0098670 entry receptor-mediated virion attachment to host cell" since the paper doesn't show it is irreversible, even if it likely is. You can use this paper for more than one annotation, but not for duplicates like this, it would need to be different. For example, a different Aspect, or GO ID.

Unacceptable
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Go term
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Public
Assessment
DanielRenfro2017-04-23 11:42:53 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0098001 receptor-mediated bacteriophage reversible attachment to host cell PMID:27422842 IMP: Inferred from Mutant Phenotype P Figures 2 and 3. Takeuchi et al. found that ΦSA012TM103 and ΦSA012TM20 mutant variants of ΦSA012 could not infect host RN4220. ΦSA012TM103 only produced turbid plaques when plated with RN4220 and ΦSA012TM20 could not produce plaques at all. The reason being that RN4220 has the tarM gene which produces α-GlcNAc modification of WTAs. With this modification ΦSA012 mutants cannot infect RN4220. RN4220 with tarM deleted became susceptible to both ΦSA012 mutants as shown in spot tests and adsorption assays. complete
CACAO 12444
on 9CAUD:W0TUZ2
Flagged
Public
Assessment
DanielRenfro2017-04-17 09:53:56 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0098001 regulation of viral process PMID:27422842 IMP: Inferred from Mutant Phenotype P Figures 2 and 3. Takeuchi et al. found that ΦSA012TM103 and ΦSA012TM20 mutant variants of ΦSA012 could not infect host RN4220. ΦSA012TM103 only produced turbid plaques when plated with RN4220 and ΦSA012TM20 could not produce plaques at all. The reason being that RN4220 has the tarM gene which produces α-GlcNAc modification of WTAs. With this modification ΦSA012 mutants cannot infect RN4220. RN4220 with tarM deleted became susceptible to both ΦSA012 mutants as shown in spot tests and adsorption assays. complete
CACAO 12444
on 9CAUD:W0TUZ2
Flagged
Public
Assessment
Scaruso2017-04-15 22:45:48 CDT

The PMID is incorrect, see the challenge. The GO term is also exceptionally general. You Figs. 2 and 3 demonstrate that the ORF103 is responsible for adsorption, a specific process.

Requires Changes
Protein
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Unique/Original