GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

Cacao

Jump to: navigation, search
« Previous Annotation
« Back to User:Csean
Next Annotation »
GO:0098003viral tail assemblyother:GO REF:0000100IGC: Inferred from Genomic Context UniProtKB:A0A0A0RSI6 UniProtKB:P03736 UniProtKB:W0TWD7 P
This annotation made on page: 9CAUD:S5Y0M4
By: Csean (group TeamPurple) on 2015-04-07 21:02:19 CDT.



TeamPoints
TeamPurple0




You must be logged in to challenge this annotation.

Entry TypeChallenging User,GroupTime/DateChallenge ReasonPoints/Assessment
ChallengeKelizabeth,
TeamBlue		2015-04-09 18:41:55 CDT

What was the % query cover and e-value for the relevant BLASTP hit?

None, yet.
Private
Assessment		Sefa12015-05-13 14:47:28 CDTYou need to be an instructor to view these notes.Unacceptable
✔ Evidence
Public
Assessment		Sefa12015-05-04 08:24:45 CDTNo notes given.Acceptable
✔ Protein
✔ Publication
✔ Qualifier
✔ Go term
✔ Evidence
✔ With/From
✔ Notes
✔ Unique/Original
Public
Assessment		DanielRenfro2015-04-20 09:35:52 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0098003 viral tail assembly other:GO_REF:0000100 IGC: Inferred from Genomic Context UniProtKB:A0A0A0RSI6

UniProtKB:P03736 UniProtKB:W0TWD7

P Using BLASTP, there was a match that met the required threshold to the phage known as moonbeam (AIW03471). The BlastP hit has a query coverage of 54%, E-value of 5e-179 and 40% identity. The match was closely related to the well known Tape Measure Protein that has been found to contribute to the length of phage tails. This gene was also found to be highly conserved in double stranded DNA based phages and would always be preceding two other genes involved in tail formation which are commonly referred to as "gene G" and "gene T", homologs from phage Lambda. (PMID:8065255) These genes are found in Troll as genes "Troll_92" and "Troll_93" and are found upstream of the tape measure protein "Troll_94". It was also found that there was a conserved frame shift within these gene sets that consistently occurs while still maintaining the integrity of the gene functions. Finally, by comparing the sequences of other dsDNA phage has shown that the tape measure protein gene that been conserved through a common ancestor.(PMID:15469818) complete
CACAO 10889
on 9CAUD:S5Y0M4
Flagged


Retrieved from "https://gowiki.tamu.edu/wiki/index.php/Special:Cacao/annotation/10889"