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9CAUD:S5Y0M4
Contents
| Species (Taxon ID) | Bacillus phage Troll. (1382932) | |
| Gene Name(s) | 94 (ECO:0000313 with EMBL:AGT13664.1) | |
| Protein Name(s) | Tapemeasure (ECO:0000313 with EMBL:AGT13664.1) | |
| External Links | ||
| UniProt | S5Y0M4 | |
| EMBL | KF208639 | |
| RefSeq | YP_008430878.1 | |
| GeneID | 16575636 | |
| GO | GO:0004040 | |
| InterPro | IPR002901 | |
| Pfam | PF01832 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0098003 |
viral tail assembly |
other:GO_REF:0000100 |
ECO:0000317 |
UniProtKB:A0A0A0RSI6 UniProtKB:P03736 UniProtKB:W0TWD7
|
P |
Using BLASTP, there was a match that met the required threshold to the phage known as moonbeam (AIW03471). The BlastP hit has a query coverage of 54%, E-value of 5e-179 and 40% identity. The match was closely related to the well known Tape Measure Protein that has been found to contribute to the length of phage tails. This gene was also found to be highly conserved in double stranded DNA based phages and would always be preceding two other genes involved in tail formation which are commonly referred to as "gene G" and "gene T", homologs from phage Lambda. (PMID:8065255[1]) These genes are found in Troll as genes "Troll_92" and "Troll_93" and are found upstream of the tape measure protein "Troll_94". It was also found that there was a conserved frame shift within these gene sets that consistently occurs while still maintaining the integrity of the gene functions. Finally, by comparing the sequences of other dsDNA phage has shown that the tape measure protein gene that been conserved through a common ancestor.(PMID:15469818[2]) |
complete | |||
|
involved_in |
GO:0098003 |
viral tail assembly |
ECO:0000317 |
genomic context evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004040 |
amidase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Sandmeier, H (1994) Acquisition and rearrangement of sequence motifs in the evolution of bacteriophage tail fibres. Mol. Microbiol. 12 343-50 PubMed GONUTS page
- ↑ Xu, J et al. (2004) Conserved translational frameshift in dsDNA bacteriophage tail assembly genes. Mol. Cell 16 11-21 PubMed GONUTS page
