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SCHPO:YPT3

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Species (Taxon ID) Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast). (284812)
Gene Name(s) ypt3 (synonyms: its5)
Protein Name(s) GTP-binding protein ypt3

RAB

External Links
UniProt P17610
EMBL X52100
X52732
CU329670
PIR S10026
RefSeq NP_593667.1
ProteinModelPortal P17610
SMR P17610
BioGrid 278693
STRING 4896.SPAC18G6.03.1
iPTMnet P17610
SwissPalm P17610
MaxQB P17610
PaxDb P17610
PRIDE P17610
EnsemblFungi SPAC18G6.03.1
EuPathDB FungiDB:SPAC18G6.03
PomBase SPAC18G6.03
HOGENOM HOG000233968
InParanoid P17610
OMA ITAIYQM
PhylomeDB P17610
Reactome R-SPO-8854214
R-SPO-8873719
PRO PR:P17610
Proteomes UP000002485
GO GO:0090726
GO:0005737
GO:0005829
GO:0005768
GO:0010008
GO:0000139
GO:0090619
GO:0005634
GO:0005886
GO:0005628
GO:0055037
GO:0005525
GO:0003924
GO:0006887
GO:0006886
GO:0061796
GO:0000281
GO:1903024
GO:0045921
GO:1990896
GO:1902441
GO:0032482
GO:0007264
GO:0042144
InterPro IPR027417
IPR005225
IPR001806
Pfam PF00071
SUPFAM SSF52540
TIGRFAMs TIGR00231
PROSITE PS51419

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:1905346

protein localization to cleavage furrow rim

PMID:27082518[1]

ECO:0000314

P

Fig. 8 part D's lower right panels details the localization of Ypt3 at the cleavage furrow rim during cytokineses, with red arrows indicating longer docking times than yellow arrows for Ypt3 puncta. The organism is S. pombe, and the authors refer to the protein as Ypt3.

complete
CACAO 12239

GO:0035838

growing cell tip

PMID:27082518[1]

ECO:0000314

C

Fig. 8B and 8C details that Ypt3 would travel alone or would colocalize with Ypt2 48% of the time in the punctate structures. This occurred mainly at the cell tip during interphase or at the division site during cytokinesis. Organism is S. pombe. "Indeed, those Ypt3-only puncta also traveled to the division site during cytokinesis and to the growing cell tips during interphase (Fig 8C and S5B Fig, arrows)"

complete
CACAO 12240

GO:0035974

meiotic spindle pole body

PMID:27630265[2]

ECO:0000314

C

Figure 6A details Ypt3 localization at the meiotic spindle pole body during sporulation. The organism is S. pombe. The authors refer to the protein as Ypt3 throughout the experiment.

complete
CACAO 12288

GO:0005737

cytoplasm

PMID:27630265[2]

ECO:0000314

C

In Fig. 2A GFP-Ypt3 was observed as numerous dots dispersed throughout the cytoplasm during sporulation. The organism is S. pombe, and the authors refer to the gene as Ypt3.

complete
CACAO 12336

involved_in

GO:1990896

protein localization to cell cortex of cell tip

PMID:27630265[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

has_input:(PomBase:SPAC23C4.10)

Seeded From UniProt

complete

involved_in

GO:1903024

positive regulation of ascospore-type prospore membrane assembly

PMID:27630265[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1902441

protein localization to meiotic spindle pole body

PMID:27630265[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

has_input:(PomBase:SPAC23C4.10)

Seeded From UniProt

complete

part_of

GO:0090726

cortical dynamic polarity patch

PMID:27020743[3]

ECO:0000314

direct assay evidence used in manual assertion

C

exists_during:(GO:0071444)

Seeded From UniProt

complete

part_of

GO:0090619

meiotic spindle pole

PMID:27630265[2]

ECO:0000314

direct assay evidence used in manual assertion

C

exists_during:(GO:0007133)

Seeded From UniProt

complete

involved_in

GO:0061796

membrane addition at site of mitotic cytokinesis

PMID:27082518[1]

ECO:0000269

experimental evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045921

positive regulation of exocytosis

PMID:12181359[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0042144

vacuole fusion, non-autophagic

PMID:12181359[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007264

small GTPase mediated signal transduction

PMID:2328721[5]

ECO:0000305

curator inference used in manual assertion

GO:0003924

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:16823372[6]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:12181359[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:16823372[6]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005628

prospore membrane

PMID:27630265[2]

ECO:0000314

direct assay evidence used in manual assertion

C

exists_during:(GO:0007137)

Seeded From UniProt

complete

enables

GO:0005525

GTP binding

GO_REF:0000050

ECO:0000255

match to sequence model evidence used in manual assertion

Pfam:PF00071

F

Seeded From UniProt

complete

enables

GO:0003924

GTPase activity

PMID:2328721[5]

ECO:0000250

sequence similarity evidence used in manual assertion

PomBase:SPBC1703.10

F

Seeded From UniProt

complete

involved_in

GO:0000281

mitotic cytokinesis

PMID:12181359[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0055037

recycling endosome

PMID:21873635[7]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1858202
MGI:MGI:99425
PANTHER:PTN000633981
RGD:619762
UniProtKB:P62491
WB:WBGene00004274
ZFIN:ZDB-GENE-041114-53

C

Seeded From UniProt

complete

part_of

GO:0055037

recycling endosome

PMID:21873635[7]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015790
MGI:MGI:1858202
MGI:MGI:99425
PANTHER:PTN000633981
RGD:619762
UniProtKB:P62491
WB:WBGene00004274
ZFIN:ZDB-GENE-041114-53

C

Seeded From UniProt

complete

involved_in

GO:0032482

Rab protein signal transduction

PMID:21873635[7]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015790
PANTHER:PTN001292747
RGD:3529
dictyBase:DDB_G0269238

P

Seeded From UniProt

complete

involved_in

GO:0006887

exocytosis

PMID:21873635[7]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000633981
SGD:S000000833
SGD:S000003178

P

Seeded From UniProt

complete

involved_in

GO:0006886

intracellular protein transport

PMID:21873635[7]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1914292
PANTHER:PTN001292747
TAIR:locus:2094029
TAIR:locus:2123010
UniProtKB:Q9BW83

P

Seeded From UniProt

complete

part_of

GO:0005768

endosome

PMID:21873635[7]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015790
PANTHER:PTN000633980
SGD:S000000833
SGD:S000003178
TAIR:locus:2024276

C

Seeded From UniProt

complete

enables

GO:0003924

GTPase activity

PMID:21873635[7]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015790
FB:FBgn0015797
FB:FBgn0016700
MGI:MGI:104606
MGI:MGI:105072
MGI:MGI:105926
MGI:MGI:1861441
MGI:MGI:1931295
MGI:MGI:2443036
MGI:MGI:99425
PANTHER:PTN001292747
PomBase:SPAC1565.06c
PomBase:SPAC4C5.02c
PomBase:SPBC1703.10
RGD:3529
RGD:619762
SGD:S000000833
SGD:S000001722
SGD:S000001856
SGD:S000001889
SGD:S000003178
SGD:S000004252
SGD:S000004460
SGD:S000004529
SGD:S000005037
SGD:S000005615
TAIR:locus:2041036
TAIR:locus:2082672
TAIR:locus:2202280
TAIR:locus:505006713
UniProtKB:P20336
UniProtKB:P20337
UniProtKB:P20338
UniProtKB:P20339
UniProtKB:P20340
UniProtKB:P51148
UniProtKB:P51149
UniProtKB:P51151
UniProtKB:P61006
UniProtKB:P61019
UniProtKB:P61020
UniProtKB:P61106
UniProtKB:P62491
UniProtKB:P62820
UniProtKB:Q13637
UniProtKB:Q15286
UniProtKB:Q15907
UniProtKB:Q86YS6
UniProtKB:Q96E17
UniProtKB:Q9H082
UniProtKB:Q9H0N0
UniProtKB:Q9H0T7
UniProtKB:Q9UL25
UniProtKB:Q9UL26
UniProtKB:Q9ULC3
WB:WBGene00004268
WB:WBGene00004271
WB:WBGene00006833

F

Seeded From UniProt

complete

enables

GO:0003924

GTPase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001806

F

Seeded From UniProt

complete

enables

GO:0005525

GTP binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001806
InterPro:IPR005225

F

Seeded From UniProt

complete

involved_in

GO:0006886

intracellular protein transport

PMID:12181359[4]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0015031

protein transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0653

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

part_of

GO:0005794

Golgi apparatus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0333

C

Seeded From UniProt

complete

part_of

GO:0005768

endosome

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0967

C

Seeded From UniProt

complete

enables

GO:0000166

nucleotide binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0547

F

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1003
UniProtKB-SubCell:SL-0039

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

enables

GO:0005525

GTP binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0342

F

Seeded From UniProt

complete

part_of

GO:0000139

Golgi membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0134

C

Seeded From UniProt

complete

part_of

GO:0010008

endosome membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0100

C

Seeded From UniProt

complete

edit table

Notes

References

See Help:References for how to manage references in GONUTS.

  1. ↑ 1.0 1.1 1.2 Wang, N et al. (2016) Roles of the TRAPP-II Complex and the Exocyst in Membrane Deposition during Fission Yeast Cytokinesis. PLoS Biol. 14 e1002437 PubMed GONUTS page
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Imada, K & Nakamura, T (2016) The exocytic Rabs Ypt3 and Ypt2 regulate the early step of biogenesis of the spore plasma membrane in fission yeast. Mol. Biol. Cell 27 3317-3328 PubMed GONUTS page
  3. ↑ Merlini, L et al. (2016) Local Pheromone Release from Dynamic Polarity Sites Underlies Cell-Cell Pairing during Yeast Mating. Curr. Biol. 26 1117-25 PubMed GONUTS page
  4. ↑ 4.0 4.1 4.2 4.3 4.4 Cheng, H et al. (2002) Role of the Rab GTP-binding protein Ypt3 in the fission yeast exocytic pathway and its connection to calcineurin function. Mol. Biol. Cell 13 2963-76 PubMed GONUTS page
  5. ↑ 5.0 5.1 Miyake, S & Yamamoto, M (1990) Identification of ras-related, YPT family genes in Schizosaccharomyces pombe. EMBO J. 9 1417-22 PubMed GONUTS page
  6. ↑ 6.0 6.1 Matsuyama, A et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24 841-7 PubMed GONUTS page
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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