GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
SCHPO:YPT3
Contents
Species (Taxon ID) | Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast). (284812) | |
Gene Name(s) | ypt3 (synonyms: its5) | |
Protein Name(s) | GTP-binding protein ypt3
RAB | |
External Links | ||
UniProt | P17610 | |
EMBL | X52100 X52732 CU329670 | |
PIR | S10026 | |
RefSeq | NP_593667.1 | |
ProteinModelPortal | P17610 | |
SMR | P17610 | |
BioGrid | 278693 | |
STRING | 4896.SPAC18G6.03.1 | |
iPTMnet | P17610 | |
SwissPalm | P17610 | |
MaxQB | P17610 | |
PaxDb | P17610 | |
PRIDE | P17610 | |
EnsemblFungi | SPAC18G6.03.1 | |
EuPathDB | FungiDB:SPAC18G6.03 | |
PomBase | SPAC18G6.03 | |
HOGENOM | HOG000233968 | |
InParanoid | P17610 | |
OMA | ITAIYQM | |
PhylomeDB | P17610 | |
Reactome | R-SPO-8854214 R-SPO-8873719 | |
PRO | PR:P17610 | |
Proteomes | UP000002485 | |
GO | GO:0090726 GO:0005737 GO:0005829 GO:0005768 GO:0010008 GO:0000139 GO:0090619 GO:0005634 GO:0005886 GO:0005628 GO:0055037 GO:0005525 GO:0003924 GO:0006887 GO:0006886 GO:0061796 GO:0000281 GO:1903024 GO:0045921 GO:1990896 GO:1902441 GO:0032482 GO:0007264 GO:0042144 | |
InterPro | IPR027417 IPR005225 IPR001806 | |
Pfam | PF00071 | |
SUPFAM | SSF52540 | |
TIGRFAMs | TIGR00231 | |
PROSITE | PS51419 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:1905346 |
protein localization to cleavage furrow rim |
ECO:0000314 |
P |
Fig. 8 part D's lower right panels details the localization of Ypt3 at the cleavage furrow rim during cytokineses, with red arrows indicating longer docking times than yellow arrows for Ypt3 puncta. The organism is S. pombe, and the authors refer to the protein as Ypt3. |
complete | |||||
GO:0035838 |
growing cell tip |
ECO:0000314 |
C |
Fig. 8B and 8C details that Ypt3 would travel alone or would colocalize with Ypt2 48% of the time in the punctate structures. This occurred mainly at the cell tip during interphase or at the division site during cytokinesis. Organism is S. pombe. "Indeed, those Ypt3-only puncta also traveled to the division site during cytokinesis and to the growing cell tips during interphase (Fig 8C and S5B Fig, arrows)" |
complete | |||||
GO:0035974 |
meiotic spindle pole body |
ECO:0000314 |
C |
Figure 6A details Ypt3 localization at the meiotic spindle pole body during sporulation. The organism is S. pombe. The authors refer to the protein as Ypt3 throughout the experiment. |
complete | |||||
GO:0005737 |
cytoplasm |
ECO:0000314 |
C |
In Fig. 2A GFP-Ypt3 was observed as numerous dots dispersed throughout the cytoplasm during sporulation. The organism is S. pombe, and the authors refer to the gene as Ypt3. |
complete | |||||
involved_in |
GO:1990896 |
protein localization to cell cortex of cell tip |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
has_input:(PomBase:SPAC23C4.10) |
Seeded From UniProt |
complete | ||
involved_in |
GO:1903024 |
positive regulation of ascospore-type prospore membrane assembly |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1902441 |
protein localization to meiotic spindle pole body |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
has_input:(PomBase:SPAC23C4.10) |
Seeded From UniProt |
complete | ||
part_of |
GO:0090726 |
cortical dynamic polarity patch |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
exists_during:(GO:0071444) |
Seeded From UniProt |
complete | ||
part_of |
GO:0090619 |
meiotic spindle pole |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
exists_during:(GO:0007133) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0061796 |
membrane addition at site of mitotic cytokinesis |
ECO:0000269 |
experimental evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045921 |
positive regulation of exocytosis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0042144 |
vacuole fusion, non-autophagic |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007264 |
small GTPase mediated signal transduction |
ECO:0000305 |
curator inference used in manual assertion |
GO:0003924 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005829 |
cytosol |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005628 |
prospore membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
exists_during:(GO:0007137) |
Seeded From UniProt |
complete | ||
enables |
GO:0005525 |
GTP binding |
ECO:0000255 |
match to sequence model evidence used in manual assertion |
Pfam:PF00071 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003924 |
GTPase activity |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
PomBase:SPBC1703.10 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000281 |
mitotic cytokinesis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0055037 |
recycling endosome |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1858202 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0055037 |
recycling endosome |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0015790 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0032482 |
Rab protein signal transduction |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0015790 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006887 |
exocytosis |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000633981 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006886 |
intracellular protein transport |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1914292 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005768 |
endosome |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0015790 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003924 |
GTPase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0015790 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003924 |
GTPase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0005525 |
GTP binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006886 |
intracellular protein transport |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0015031 |
protein transport |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005794 |
Golgi apparatus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005768 |
endosome |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005886 |
plasma membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0005525 |
GTP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0000139 |
Golgi membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0010008 |
endosome membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Wang, N et al. (2016) Roles of the TRAPP-II Complex and the Exocyst in Membrane Deposition during Fission Yeast Cytokinesis. PLoS Biol. 14 e1002437 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Imada, K & Nakamura, T (2016) The exocytic Rabs Ypt3 and Ypt2 regulate the early step of biogenesis of the spore plasma membrane in fission yeast. Mol. Biol. Cell 27 3317-3328 PubMed GONUTS page
- ↑ Merlini, L et al. (2016) Local Pheromone Release from Dynamic Polarity Sites Underlies Cell-Cell Pairing during Yeast Mating. Curr. Biol. 26 1117-25 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 4.3 4.4 Cheng, H et al. (2002) Role of the Rab GTP-binding protein Ypt3 in the fission yeast exocytic pathway and its connection to calcineurin function. Mol. Biol. Cell 13 2963-76 PubMed GONUTS page
- ↑ 5.0 5.1 Miyake, S & Yamamoto, M (1990) Identification of ras-related, YPT family genes in Schizosaccharomyces pombe. EMBO J. 9 1417-22 PubMed GONUTS page
- ↑ 6.0 6.1 Matsuyama, A et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24 841-7 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
c
d
f
g
m
p
- GO:0005886 ! plasma membrane
- GO:0045921 ! positive regulation of exocytosis
- GO:1903024 ! positive regulation of ascospore-type prospore membrane formation
- GO:0005628 ! prospore membrane
- GO:1902441 ! protein localization to meiotic spindle pole body
- GO:1990896 ! protein localization to cell cortex of cell tip
- GO:1905346 ! protein localization to cleavage furrow rim
- GO:0015031 ! protein transport
s