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SCHPO:TSNAX
Contents
| Species (Taxon ID) | Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast). (284812) | |
| Gene Name(s) | No Information Provided. | |
| Protein Name(s) | Translin-associated protein X homolog (ECO:0000250 with UniProtKB:Q9JHB5, ECO:0000303 with PMID:16043634[1]) | |
| External Links | ||
| UniProt | O74955 | |
| EMBL | CU329672 | |
| PIR | T41566 | |
| RefSeq | NP_587780.1 | |
| ProteinModelPortal | O74955 | |
| SMR | O74955 | |
| BioGrid | 276018 | |
| STRING | 4896.SPCC736.09c.1 | |
| iPTMnet | O74955 | |
| MaxQB | O74955 | |
| PaxDb | O74955 | |
| PRIDE | O74955 | |
| EnsemblFungi | SPCC736.09c.1 | |
| GeneID | 2539455 | |
| KEGG | spo:SPCC736.09c | |
| EuPathDB | FungiDB:SPCC736.09c | |
| PomBase | SPCC736.09c | |
| InParanoid | O74955 | |
| OMA | KAENVCY | |
| PhylomeDB | O74955 | |
| Reactome | R-SPO-426486 | |
| PRO | PR:O74955 | |
| Proteomes | UP000002485 | |
| GO | GO:0005737 GO:0005829 GO:0005634 GO:0004521 GO:0043565 GO:0003697 GO:0008033 | |
| Gene3D | 1.20.58.190 1.20.58.200 | |
| InterPro | IPR016069 IPR002848 IPR016068 IPR036081 | |
| PANTHER | PTHR10741 | |
| Pfam | PF01997 | |
| SUPFAM | SSF74784 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0000724 |
double-strand break repair via homologous recombination |
ECO:0000304 |
|
P |
complete | |||||
| GO:0005515 |
protein binding |
ECO:0000021 |
|
F |
complete | |||||
| GO:0005634 |
nucleus |
ECO:0000314 |
|
C |
complete | |||||
| GO:0005634 |
nucleus |
ECO:0000303 |
|
C |
complete | |||||
| GO:0005829 |
cytosol |
ECO:0000314 |
|
C |
complete | |||||
| GO:0006303 |
double-strand break repair via nonhomologous end joining |
ECO:0000304 |
|
P |
complete | |||||
|
part_of |
GO:0005829 |
cytosol |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000077814 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:109263 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:109263 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0004521 |
endoribonuclease activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0033528 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003697 |
single-stranded DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000077814 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0090502 |
RNA phosphodiester bond hydrolysis, endonucleolytic |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0004521 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR002848 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0008033 |
tRNA processing |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
NOT|involved_in |
GO:0006303 |
double-strand break repair via nonhomologous end joining |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
NOT|involved_in |
GO:0000724 |
double-strand break repair via homologous recombination |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Laufman, O et al. (2005) Cloning and characterization of the Schizosaccharomyces pombe homologs of the human protein Translin and the Translin-associated protein TRAX. Nucleic Acids Res. 33 4128-39 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 Jaendling, A et al. (2008) Functional characterisation of the Schizosaccharomyces pombe homologue of the leukaemia-associated translocation breakpoint binding protein translin and its binding partner, TRAX. Biochim. Biophys. Acta 1783 203-13 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 Matsuyama, A et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24 841-7 PubMed GONUTS page
- ↑ Aslett, M & Wood, V (2006) Gene Ontology annotation status of the fission yeast genome: preliminary coverage approaches 100%. Yeast 23 913-9 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 5.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Li, L et al. (2012) The translin-TRAX complex (C3PO) is a ribonuclease in tRNA processing. Nat. Struct. Mol. Biol. 19 824-30 PubMed GONUTS page
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