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SCHPO:RNA14
Contents
| Species (Taxon ID) | Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast). (284812) | |
| Gene Name(s) | rna14 | |
| Protein Name(s) | mRNA 3'-end-processing protein rna14 | |
| External Links | ||
| UniProt | O14233 | |
| EMBL | CU329670 | |
| PIR | T11668 | |
| RefSeq | NP_593303.1 | |
| ProteinModelPortal | O14233 | |
| BioGrid | 278097 | |
| STRING | 4896.SPAC6F12.17.1 | |
| iPTMnet | O14233 | |
| MaxQB | O14233 | |
| PaxDb | O14233 | |
| PRIDE | O14233 | |
| EnsemblFungi | SPAC6F12.17.1 | |
| GeneID | 2541600 | |
| KEGG | spo:SPAC6F12.17 | |
| EuPathDB | FungiDB:SPAC6F12.17 | |
| PomBase | SPAC6F12.17 | |
| InParanoid | O14233 | |
| KO | K14408 | |
| OMA | NICIAQL | |
| PhylomeDB | O14233 | |
| PRO | PR:O14233 | |
| Proteomes | UP000002485 | |
| GO | GO:0005739 GO:0005847 GO:0005634 GO:0003729 GO:0006379 GO:0006378 GO:0031440 GO:0031123 | |
| InterPro | IPR003107 IPR008847 IPR011990 | |
| Pfam | PF05843 | |
| SMART | SM00386 | |
| SUPFAM | SSF48452 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0051984 |
positive regulation of chromosome segregation |
ECO:0000315 |
P |
Fig. 2 part C shows chromosome segregation defects indicated by arrows in the Rna14 mutant. Fig. 3 part B shows the percentage of chromosome loss over time in both the wild type and mutant Rna14 strains, and indicates a 20% chromosome loss with the Rna14 mutant after twelve hours. Fig. 3 part C shows the timed viability of these Rn14 mutants, with only 10% of the Rna14 mutants surviving after 12 hours. These show Rna14 having a positive regulation of chromosome segregation in the organism S. pombe. Both the experiment and UniProt refer to the gene as Rna14. |
complete | |||||
|
involved_in |
GO:0031440 |
regulation of mRNA 3'-end processing |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006379 |
mRNA cleavage |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006378 |
mRNA polyadenylation |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005847 |
mRNA cleavage and polyadenylation specificity factor complex |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005739 |
mitochondrion |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003674 |
molecular_function |
ECO:0000307 |
no biological data found used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0031123 |
RNA 3'-end processing |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000463331 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000463331 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003729 |
mRNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000463331 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006396 |
RNA processing |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006397 |
mRNA processing |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006397 |
mRNA processing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Sonkar, A et al. (2016) Cleavage and polyadenylation factor, Rna14 is an essential protein required for the maintenance of genomic integrity in fission yeast Schizosaccharomyces pombe. Biochim. Biophys. Acta 1863 189-97 PubMed GONUTS page
- ↑ Matsuyama, A et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24 841-7 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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