GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

SCHPO:PDC1

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast). (284812)
Gene Name(s) No Information Provided.
Protein Name(s) Putative pyruvate decarboxylase C13A11.06
External Links
UniProt Q09737
EMBL CU329670
PIR T38759
RefSeq XP_001713041.1
ProteinModelPortal Q09737
SMR Q09737
BioGrid 280554
STRING 4896.SPAC13A11.06.1
MaxQB Q09737
PaxDb Q09737
PRIDE Q09737
EnsemblFungi SPAC13A11.06.1
EuPathDB FungiDB:SPAC13A11.06
PomBase SPAC13A11.06
HOGENOM HOG000061334
InParanoid Q09737
OMA EWIGNCN
PhylomeDB Q09737
PRO PR:Q09737
Proteomes UP000002485
GO GO:0005829
GO:0005634
GO:0047433
GO:0016831
GO:0000287
GO:0004737
GO:0030976
GO:0000949
GO:0006067
GO:0019655
GO:0006559
GO:0006090
GO:0006569
InterPro IPR029035
IPR029061
IPR012000
IPR012001
IPR012110
IPR011766
Pfam PF02775
PF00205
PF02776
PIRSF PIRSF036565
SUPFAM SSF52467
SSF52518

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0033962

cytoplasmic mRNA processing body assembly

PMID:23319050[1]

ECO:0000315

P

Figure 5 demonstrates the requirement of pdc1 in p-body assembly and Figure 6 shows the "scaffolding" region of the protein for p-body assembly.

complete
CACAO 7236

GO:1901835

positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA

PMID:23319050[1]

ECO:0000315

P

Figure 7 B and C shows the lack of mRNA decapping in pdc1 mutants and enhanced decapping activity when overexpressed as compared to the wild-type.

complete
CACAO 7237

involved_in

GO:0019655

glycolytic fermentation to ethanol

GO_REF:0000024

ECO:0000266

sequence orthology evidence used in manual assertion

SGD:S000004124

P

Seeded From UniProt

complete

involved_in

GO:0006090

pyruvate metabolic process

GO_REF:0000024

ECO:0000266

sequence orthology evidence used in manual assertion

SGD:S000004124

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:16823372[2]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:16823372[2]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0004737

pyruvate decarboxylase activity

GO_REF:0000024

ECO:0000266

sequence orthology evidence used in manual assertion

SGD:S000003319

F

Seeded From UniProt

complete

enables

GO:0047433

branched-chain-2-oxoacid decarboxylase activity

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001826953
SGD:S000004034
SGD:S000004124

F

Seeded From UniProt

complete

enables

GO:0016831

carboxy-lyase activity

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000438887
SGD:S000002238
SGD:S000002788

F

Seeded From UniProt

complete

involved_in

GO:0006569

tryptophan catabolic process

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001826953
SGD:S000002788
SGD:S000003319
SGD:S000004034
SGD:S000004124

P

Seeded From UniProt

complete

involved_in

GO:0006559

L-phenylalanine catabolic process

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001826953
SGD:S000002788
SGD:S000003319
SGD:S000004034
SGD:S000004124

P

Seeded From UniProt

complete

involved_in

GO:0006090

pyruvate metabolic process

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001826953
SGD:S000004034
SGD:S000004124

P

Seeded From UniProt

complete

involved_in

GO:0006067

ethanol metabolic process

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001826953
SGD:S000003319

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000438887
SGD:S000004034
TAIR:locus:2123827
TAIR:locus:2160170

C

Seeded From UniProt

complete

enables

GO:0004737

pyruvate decarboxylase activity

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001826953
SGD:S000003319
SGD:S000004034
SGD:S000004124

F

Seeded From UniProt

complete

involved_in

GO:0000949

aromatic amino acid family catabolic process to alcohol via Ehrlich pathway

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001826953
SGD:S000002788
SGD:S000003319
SGD:S000004034
SGD:S000004124

P

Seeded From UniProt

complete

enables

GO:0000287

magnesium ion binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR012000

F

Seeded From UniProt

complete

enables

GO:0003824

catalytic activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR011766

F

Seeded From UniProt

complete

enables

GO:0016831

carboxy-lyase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR012110

F

Seeded From UniProt

complete

enables

GO:0030976

thiamine pyrophosphate binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR011766
InterPro:IPR012000
InterPro:IPR012001

F

Seeded From UniProt

complete

enables

GO:0004737

pyruvate decarboxylase activity

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:4.1.1.1

F

Seeded From UniProt

complete

enables

GO:0016829

lyase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0456

F

Seeded From UniProt

complete

enables

GO:0016831

carboxy-lyase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0210

F

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Wang, CY et al. (2013) Pdc1 functions in the assembly of P bodies in Schizosaccharomyces pombe. Mol. Cell. Biol. 33 1244-53 PubMed GONUTS page
  2. 2.0 2.1 Matsuyama, A et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24 841-7 PubMed GONUTS page
  3. 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page