GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
SCHPO:PDC1
Contents
| Species (Taxon ID) | Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast). (284812) | |
| Gene Name(s) | No Information Provided. | |
| Protein Name(s) | Putative pyruvate decarboxylase C13A11.06 | |
| External Links | ||
| UniProt | Q09737 | |
| EMBL | CU329670 | |
| PIR | T38759 | |
| RefSeq | XP_001713041.1 | |
| ProteinModelPortal | Q09737 | |
| SMR | Q09737 | |
| BioGrid | 280554 | |
| STRING | 4896.SPAC13A11.06.1 | |
| MaxQB | Q09737 | |
| PaxDb | Q09737 | |
| PRIDE | Q09737 | |
| EnsemblFungi | SPAC13A11.06.1 | |
| EuPathDB | FungiDB:SPAC13A11.06 | |
| PomBase | SPAC13A11.06 | |
| HOGENOM | HOG000061334 | |
| InParanoid | Q09737 | |
| OMA | EWIGNCN | |
| PhylomeDB | Q09737 | |
| PRO | PR:Q09737 | |
| Proteomes | UP000002485 | |
| GO | GO:0005829 GO:0005634 GO:0047433 GO:0016831 GO:0000287 GO:0004737 GO:0030976 GO:0000949 GO:0006067 GO:0019655 GO:0006559 GO:0006090 GO:0006569 | |
| InterPro | IPR029035 IPR029061 IPR012000 IPR012001 IPR012110 IPR011766 | |
| Pfam | PF02775 PF00205 PF02776 | |
| PIRSF | PIRSF036565 | |
| SUPFAM | SSF52467 SSF52518 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0033962 |
cytoplasmic mRNA processing body assembly |
ECO:0000315 |
P |
Figure 5 demonstrates the requirement of pdc1 in p-body assembly and Figure 6 shows the "scaffolding" region of the protein for p-body assembly. |
complete | |||||
| GO:1901835 |
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA |
ECO:0000315 |
P |
Figure 7 B and C shows the lack of mRNA decapping in pdc1 mutants and enhanced decapping activity when overexpressed as compared to the wild-type. |
complete | |||||
|
involved_in |
GO:0019655 |
glycolytic fermentation to ethanol |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
SGD:S000004124 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006090 |
pyruvate metabolic process |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
SGD:S000004124 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005829 |
cytosol |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004737 |
pyruvate decarboxylase activity |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
SGD:S000003319 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0047433 |
branched-chain-2-oxoacid decarboxylase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001826953 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016831 |
carboxy-lyase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000438887 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006569 |
tryptophan catabolic process |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001826953 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006559 |
L-phenylalanine catabolic process |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001826953 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006090 |
pyruvate metabolic process |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001826953 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006067 |
ethanol metabolic process |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001826953 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000438887 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0004737 |
pyruvate decarboxylase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001826953 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0000949 |
aromatic amino acid family catabolic process to alcohol via Ehrlich pathway |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001826953 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0000287 |
magnesium ion binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003824 |
catalytic activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016831 |
carboxy-lyase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0030976 |
thiamine pyrophosphate binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004737 |
pyruvate decarboxylase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016829 |
lyase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016831 |
carboxy-lyase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Wang, CY et al. (2013) Pdc1 functions in the assembly of P bodies in Schizosaccharomyces pombe. Mol. Cell. Biol. 33 1244-53 PubMed GONUTS page
- ↑ 2.0 2.1 Matsuyama, A et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24 841-7 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
a
d
f
l
p
s