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SCHPO:MSH1
Contents
| Species (Taxon ID) | Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast). (284812) | |
| Gene Name(s) | msh1 | |
| Protein Name(s) | MutS protein homolog 1 | |
| External Links | ||
| UniProt | O13921 | |
| EMBL | CU329670 AB027833 | |
| PIR | T38256 | |
| RefSeq | NP_593649.2 | |
| ProteinModelPortal | O13921 | |
| BioGrid | 279280 | |
| STRING | 4896.SPAC13F5.01c.1 | |
| iPTMnet | O13921 | |
| MaxQB | O13921 | |
| PaxDb | O13921 | |
| PRIDE | O13921 | |
| EnsemblFungi | SPAC13F5.01c.1 | |
| GeneID | 2542833 | |
| KEGG | spo:SPAC13F5.01c | |
| EuPathDB | FungiDB:SPAC13F5.01c | |
| PomBase | SPAC13F5.01c | |
| HOGENOM | HOG000157750 | |
| InParanoid | O13921 | |
| OMA | CGDFYEF | |
| PhylomeDB | O13921 | |
| PRO | PR:O13921 | |
| Proteomes | UP000002485 | |
| GO | GO:0032300 GO:0005739 GO:0005524 GO:0003684 GO:0008094 GO:0030983 GO:0006298 GO:0043504 | |
| Gene3D | 3.30.420.110 3.40.1170.10 | |
| InterPro | IPR007695 IPR017261 IPR000432 IPR007696 IPR016151 IPR036187 IPR007860 IPR036678 IPR027417 | |
| Pfam | PF01624 PF05188 PF05192 PF00488 | |
| PIRSF | PIRSF037677 | |
| SMART | SM00534 SM00533 | |
| SUPFAM | SSF48334 SSF52540 SSF53150 SSF55271 | |
| PROSITE | PS00486 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
involved_in |
GO:0043504 |
mitochondrial DNA repair |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
SGD:S000001162 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0030983 |
mismatched DNA binding |
ECO:0000255 |
match to sequence model evidence used in manual assertion |
Pfam:PF01624 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0008094 |
DNA-dependent ATPase activity |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
SGD:S000001162 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006298 |
mismatch repair |
ECO:0000255 |
match to sequence model evidence used in manual assertion |
Pfam:PF01624 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005739 |
mitochondrion |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0000262 |
mitochondrial chromosome |
ECO:0000305 |
curator inference used in manual assertion |
GO:0003677 GO:0005739 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0043504 |
mitochondrial DNA repair |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002260798 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0032300 |
mismatch repair complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10625 |
C |
Seeded From UniProt |
complete | ||
|
contributes_to |
GO:0030983 |
mismatched DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:101816 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0008094 |
DNA-dependent ATPase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002260779 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006298 |
mismatch repair |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10625 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005739 |
mitochondrion |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002260798 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10625 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10625 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000432 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006298 |
mismatch repair |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000432 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0030983 |
mismatched DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000432 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006281 |
DNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005739 |
mitochondrion |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Matsuyama, A et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24 841-7 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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