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RAT:VAMP3

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Species (Taxon ID) Rattus norvegicus (Rat). (10116)
Gene Name(s) Vamp3 (synonyms: Syb3)
Protein Name(s) Vesicle-associated membrane protein 3

VAMP-3 Cellubrevin CEB Synaptobrevin-3

External Links
UniProt P63025
EMBL S63830
BC088119
PIR S35077
RefSeq NP_476438.1
UniGene Rn.219999
PDB 5KJ7
5KJ8
PDBsum 5KJ7
5KJ8
ProteinModelPortal P63025
SMR P63025
BioGrid 248164
CORUM P63025
IntAct P63025
MINT MINT-4139742
STRING 10116.ENSRNOP00000048364
iPTMnet P63025
PhosphoSitePlus P63025
PaxDb P63025
PRIDE P63025
Ensembl ENSRNOT00000051554
GeneID 29528
KEGG rno:29528
UCSC RGD:61880
CTD 9341
RGD 61880
eggNOG KOG0860
COG5143
GeneTree ENSGT00550000074449
HOGENOM HOG000042711
HOVERGEN HBG006675
InParanoid P63025
KO K13505
OMA IIIWACS
OrthoDB EOG091G0MPE
PhylomeDB P63025
TreeFam TF313666
Reactome [www.reactome.org/content/detail/R-RNO-1236974 R-RNO-1236974]
[www.reactome.org/content/detail/R-RNO-6811440 R-RNO-6811440]
[www.reactome.org/content/detail/R-RNO-8856825 R-RNO-8856825]
[www.reactome.org/content/detail/R-RNO-8856828 R-RNO-8856828]
PRO PR:P63025
Proteomes UP000002494
Bgee ENSRNOG00000030055
Genevisible P63025
GO GO:0016324
GO:0030054
GO:0009986
GO:0030665
GO:0005829
GO:0016021
GO:0043231
GO:0043229
GO:0043005
GO:0048471
GO:0005886
GO:0055037
GO:0030141
GO:0031201
GO:0045202
GO:0005484
GO:0000149
GO:0017075
GO:0017156
GO:0006887
GO:0043001
GO:1903531
GO:0001921
GO:0006461
GO:0042147
GO:0035493
GO:0034446
GO:0006906
GO:0016192
InterPro IPR001388
IPR016444
Pfam PF00957
PIRSF PIRSF005409
PRINTS PR00219
PROSITE PS00417
PS50892

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0097708

intracellular vesicle

PMID:12737809[1]

ECO:0000314

C

Rattus norvegicus, Vesicle-associated membrane protein 3;

In figure 3A it is shown that cellubrevin is found on intracellular vesicles in late telophase.

complete
CACAO 12981

involved_in

GO:0042147

retrograde transport, endosome to Golgi

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q15836

P

Seeded From UniProt

complete

involved_in

GO:0034446

substrate adhesion-dependent cell spreading

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P63024

P

Seeded From UniProt

complete

involved_in

GO:0016192

vesicle-mediated transport

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P63024

P

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P63024

C

Seeded From UniProt

complete

involved_in

GO:0001921

positive regulation of receptor recycling

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P63024

P

Seeded From UniProt

complete

part_of

GO:0030285

integral component of synaptic vesicle membrane

PMID:17110340[2]

ECO:0006042

cell fractionation evidence used in manual assertion

C

part_of:(UBERON:0000955)

Seeded From UniProt

complete

part_of

GO:0030285

integral component of synaptic vesicle membrane

PMID:17110340[2]

ECO:0001230

mass spectrometry evidence used in manual assertion

C

part_of:(UBERON:0000955)

Seeded From UniProt

complete

part_of

GO:0030285

integral component of synaptic vesicle membrane

PMID:17110340[2]

ECO:0000279

western blot evidence used in manual assertion

C

part_of:(UBERON:0000955)

Seeded From UniProt

complete

involved_in

GO:0065003

protein-containing complex assembly

PMID:10051443[3]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0055037

recycling endosome

PMID:10468577[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0043231

intracellular membrane-bounded organelle

PMID:10051443[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0043229

intracellular organelle

PMID:10340764[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0031201

SNARE complex

PMID:10051443[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0030665

clathrin-coated vesicle membrane

PMID:7573412[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0017075

syntaxin-1 binding

PMID:7698987[7]

ECO:0000353

physical interaction evidence used in manual assertion

RGD:69430

F

Seeded From UniProt

complete

part_of

GO:0016324

apical plasma membrane

PMID:7573412[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

PMID:10051443[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0000149

SNARE binding

PMID:7698987[7]

ECO:0000353

physical interaction evidence used in manual assertion

RGD:3728

F

Seeded From UniProt

complete

involved_in

GO:0071346

cellular response to interferon-gamma

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63024
ensembl:ENSMUSP00000030797

P

Seeded From UniProt

complete

part_of

GO:0048471

perinuclear region of cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63024
ensembl:ENSMUSP00000030797

C

Seeded From UniProt

complete

part_of

GO:0045335

phagocytic vesicle

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63024
ensembl:ENSMUSP00000030797

C

Seeded From UniProt

complete

involved_in

GO:0043001

Golgi to plasma membrane protein transport

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63024
ensembl:ENSMUSP00000030797

P

Seeded From UniProt

complete

involved_in

GO:0035493

SNARE complex assembly

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63024
ensembl:ENSMUSP00000030797

P

Seeded From UniProt

complete

involved_in

GO:0034446

substrate adhesion-dependent cell spreading

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63024
ensembl:ENSMUSP00000030797

P

Seeded From UniProt

complete

part_of

GO:0031410

cytoplasmic vesicle

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63024
ensembl:ENSMUSP00000030797

C

Seeded From UniProt

complete

part_of

GO:0030141

secretory granule

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63024
ensembl:ENSMUSP00000030797

C

Seeded From UniProt

complete

involved_in

GO:0017156

calcium ion regulated exocytosis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63024
ensembl:ENSMUSP00000030797

P

Seeded From UniProt

complete

involved_in

GO:0016192

vesicle-mediated transport

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63024
ensembl:ENSMUSP00000030797

P

Seeded From UniProt

complete

part_of

GO:0009986

cell surface

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63024
ensembl:ENSMUSP00000030797

C

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63024
ensembl:ENSMUSP00000030797

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63024
ensembl:ENSMUSP00000030797

C

Seeded From UniProt

complete

involved_in

GO:0001921

positive regulation of receptor recycling

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63024
ensembl:ENSMUSP00000030797

P

Seeded From UniProt

complete

involved_in

GO:1903531

negative regulation of secretion by cell

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q15836
ensembl:ENSP00000054666

P

Seeded From UniProt

complete

part_of

GO:0055037

recycling endosome

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q15836
ensembl:ENSP00000054666

C

Seeded From UniProt

complete

part_of

GO:0043231

intracellular membrane-bounded organelle

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q15836
ensembl:ENSP00000054666

C

Seeded From UniProt

complete

involved_in

GO:0042147

retrograde transport, endosome to Golgi

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q15836
ensembl:ENSP00000054666

P

Seeded From UniProt

complete

part_of

GO:0031201

SNARE complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q15836
ensembl:ENSP00000054666

C

Seeded From UniProt

complete

part_of

GO:0030136

clathrin-coated vesicle

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q15836
ensembl:ENSP00000054666

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q15836
ensembl:ENSP00000054666

C

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001388

C

Seeded From UniProt

complete

involved_in

GO:0016192

vesicle-mediated transport

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001388

P

Seeded From UniProt

complete

part_of

GO:0043005

neuron projection

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0771
UniProtKB-SubCell:SL-0261

C

Seeded From UniProt

complete

part_of

GO:0045202

synapse

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0770

C

Seeded From UniProt

complete

part_of

GO:0030054

cell junction

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0965

C

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472
UniProtKB-SubCell:SL-0162

C

Seeded From UniProt

complete

involved_in

GO:0015031

protein transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0653

P

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0812

C

Seeded From UniProt

complete

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Notes

References

See Help:References for how to manage references in GONUTS.

  1. ↑ Low, SH et al. (2003) Syntaxin 2 and endobrevin are required for the terminal step of cytokinesis in mammalian cells. Dev. Cell 4 753-9 PubMed GONUTS page
  2. ↑ 2.0 2.1 2.2 Takamori, S et al. (2006) Molecular anatomy of a trafficking organelle. Cell 127 831-46 PubMed GONUTS page
  3. ↑ 3.0 3.1 3.2 3.3 St-Denis, JF et al. (1999) SNAP-23 participates in SNARE complex assembly in rat adipose cells. Biochem. J. 338 ( Pt 3) 709-15 PubMed GONUTS page
  4. ↑ Vergés, M et al. (1999) A tubular endosomal fraction from rat liver: biochemical evidence of receptor sorting by default. Proc. Natl. Acad. Sci. U.S.A. 96 10146-51 PubMed GONUTS page
  5. ↑ Maienschein, V et al. (1999) A plethora of presynaptic proteins associated with ATP-storing organelles in cultured astrocytes. Glia 26 233-44 PubMed GONUTS page
  6. ↑ 6.0 6.1 Franki, N et al. (1995) Water channel-carrying vesicles in the rat IMCD contain cellubrevin. Am. J. Physiol. 269 C797-801 PubMed GONUTS page
  7. ↑ 7.0 7.1 Chilcote, TJ et al. (1995) Cellubrevin and synaptobrevins: similar subcellular localization and biochemical properties in PC12 cells. J. Cell Biol. 129 219-31 PubMed GONUTS page
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