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RAT:SC6A4

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Species (Taxon ID) Rattus norvegicus (Rat). (10116)
Gene Name(s) Slc6a4
Protein Name(s) Sodium-dependent serotonin transporter

5HT transporter 5HTT Solute carrier family 6 member 4

External Links
UniProt P31652
EMBL X63995
X63253
M79450
Y11024
PIR S19585
S30604
RefSeq NP_037166.2
XP_008766172.1
UniGene Rn.1663
ProteinModelPortal P31652
IntAct P31652
BindingDB P31652
ChEMBL CHEMBL2096672
GuidetoPHARMACOLOGY 928
Ensembl ENSRNOT00000004717
GeneID 25553
KEGG rno:25553
CTD 6532
RGD 3714
eggNOG COG0733
GeneTree ENSGT00760000118857
HOGENOM HOG000116406
HOVERGEN HBG071421
InParanoid P31652
KO K05037
OMA TSCKNSW
OrthoDB EOG793B71
PhylomeDB P31652
TreeFam TF343812
NextBio 607109
PRO PR:P31652
Proteomes UP000002494
Genevestigator P31652
GO GO:0005829
GO:0012505
GO:0010008
GO:0005887
GO:0045121
GO:0043005
GO:0005886
GO:0051015
GO:0019811
GO:0017022
GO:0042803
GO:0015222
GO:0005335
GO:0017075
GO:0007420
GO:0048854
GO:0071321
GO:0071300
GO:0007623
GO:0007626
GO:0007613
GO:0021941
GO:0045665
GO:0046621
GO:0032227
GO:0045787
GO:0010628
GO:0051260
GO:0051259
GO:0042493
GO:0032355
GO:0001666
GO:0007584
GO:0010033
GO:0009636
GO:0006837
GO:0051610
GO:0035176
GO:0042713
GO:0021794
GO:0042310
InterPro IPR000175
IPR013086
PANTHER PTHR11616
Pfam PF03491
PF00209
PRINTS PR01203
PR00176
PROSITE PS00610
PS00754
PS50267

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0090067

regulation of thalamus size

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P31645

P

Seeded From UniProt

complete

involved_in

GO:0051610

serotonin uptake

PMID:15627510[1]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051610

serotonin uptake

PMID:14642278[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051260

protein homooligomerization

PMID:12944413[3]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051259

protein complex oligomerization

PMID:10716733[4]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0051015

actin filament binding

PMID:15627510[1]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0017075

syntaxin-1 binding

PMID:11709063[5]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P32851

F

Seeded From UniProt

complete

enables

GO:0017075

syntaxin-1 binding

PMID:14642278[2]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P32851

F

Seeded From UniProt

complete

enables

GO:0017022

myosin binding

PMID:12944413[3]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q62812

F

Seeded From UniProt

complete

enables

GO:0005335

serotonin:sodium symporter activity

PMID:11709063[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0012505

endomembrane system

PMID:16870614[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0012505

endomembrane system

PMID:10716733[4]

ECO:0000303

author statement without traceable support used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0006837

serotonin transport

PMID:11709063[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

PMID:15627510[1]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

PMID:11709063[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

PMID:10716733[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0005335

serotonin:sodium symporter activity

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P31645

F

Seeded From UniProt

complete

part_of

GO:0099154

serotonergic synapse

PMID:10460242[7]

ECO:0006003

electron microscopy evidence used in manual assertion

C

part_of:(UBERON:0002435)

Seeded From UniProt

complete

part_of

GO:0099056

integral component of presynaptic membrane

PMID:10460242[7]

ECO:0006003

electron microscopy evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0099055

integral component of postsynaptic membrane

PMID:10460242[7]

ECO:0006003

electron microscopy evidence used in manual assertion

C

part_of:(UBERON:0002435)

Seeded From UniProt

complete

involved_in

GO:0071321

cellular response to cGMP

PMID:17310063[8]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0071300

cellular response to retinoic acid

PMID:17895527[9]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051610

serotonin uptake

PMID:12944413[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045665

negative regulation of neuron differentiation

PMID:18573488[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0045121

membrane raft

PMID:15226315[11]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0043005

neuron projection

PMID:17310063[8]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0042803

protein homodimerization activity

PMID:12944413[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0042713

sperm ejaculation

PMID:20704641[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0042493

response to drug

PMID:20501324[13]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0042310

vasoconstriction

PMID:14605793[14]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032355

response to estradiol

PMID:19168037[15]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032227

negative regulation of synaptic transmission, dopaminergic

PMID:20730799[16]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0021941

negative regulation of cerebellar granule cell precursor proliferation

PMID:18573488[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0019811

cocaine binding

PMID:15994310[17]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0014064

positive regulation of serotonin secretion

PMID:25261262[18]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010033

response to organic substance

PMID:20002520[19]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007626

locomotory behavior

PMID:12220705[20]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007623

circadian rhythm

PMID:18482738[21]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007613

memory

PMID:20730799[16]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007584

response to nutrient

PMID:21068163[22]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007420

brain development

PMID:20127812[23]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006837

serotonin transport

PMID:15994310[17]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0005335

serotonin:sodium symporter activity

PMID:15994310[17]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0001666

response to hypoxia

PMID:11259539[24]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051610

serotonin uptake

PMID:21873635[25]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0010414
MGI:MGI:96285
PANTHER:PTN002481010
RGD:3714
UniProtKB:P31645
WB:WBGene00003387

P

Seeded From UniProt

complete

enables

GO:0051378

serotonin binding

PMID:21873635[25]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN002481010
UniProtKB:F1MLI6
UniProtKB:Q9XT49

F

Seeded From UniProt

complete

part_of

GO:0043005

neuron projection

PMID:21873635[25]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN002481010
RGD:3714

C

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

PMID:21873635[25]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0035969
FB:FBgn0039915
MGI:MGI:1336891
MGI:MGI:1336892
MGI:MGI:95627
MGI:MGI:95760
PANTHER:PTN000177662
RGD:3714
RGD:3715
RGD:620533
RGD:621822
UniProtKB:P31645
UniProtKB:Q01959
UniProtKB:Q9Y345

C

Seeded From UniProt

complete

enables

GO:0005335

serotonin:sodium symporter activity

PMID:21873635[25]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0010414
PANTHER:PTN002481010
RGD:3714
UniProtKB:P31645
WB:WBGene00003387

F

Seeded From UniProt

complete

involved_in

GO:0055085

transmembrane transport

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0015293

P

Seeded From UniProt

complete

involved_in

GO:0090067

regulation of thalamus size

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P31645
ensembl:ENSP00000261707

P

Seeded From UniProt

complete

involved_in

GO:0051610

serotonin uptake

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P31645
ensembl:ENSP00000261707

P

Seeded From UniProt

complete

part_of

GO:0045121

membrane raft

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P31645
ensembl:ENSP00000261707

C

Seeded From UniProt

complete

enables

GO:0017137

Rab GTPase binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P31645
ensembl:ENSP00000261707

F

Seeded From UniProt

complete

involved_in

GO:0015844

monoamine transport

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P31645
ensembl:ENSP00000261707

P

Seeded From UniProt

complete

part_of

GO:0012505

endomembrane system

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P31645
ensembl:ENSP00000261707

C

Seeded From UniProt

complete

involved_in

GO:0009636

response to toxic substance

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P31645
ensembl:ENSP00000261707

P

Seeded From UniProt

complete

enables

GO:0008504

monoamine transmembrane transporter activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P31645
ensembl:ENSP00000261707

F

Seeded From UniProt

complete

involved_in

GO:0006837

serotonin transport

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P31645
ensembl:ENSP00000261707

P

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P31645
ensembl:ENSP00000261707

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P31645
ensembl:ENSP00000261707

C

Seeded From UniProt

complete

enables

GO:0005335

serotonin:sodium symporter activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P31645
ensembl:ENSP00000261707

F

Seeded From UniProt

complete

involved_in

GO:0071310

cellular response to organic substance

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q60857
ensembl:ENSMUSP00000104039

P

Seeded From UniProt

complete

involved_in

GO:0051610

serotonin uptake

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q60857
ensembl:ENSMUSP00000104039

P

Seeded From UniProt

complete

enables

GO:0050998

nitric-oxide synthase binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q60857
ensembl:ENSMUSP00000104039

F

Seeded From UniProt

complete

involved_in

GO:0048854

brain morphogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q60857
ensembl:ENSMUSP00000104039

P

Seeded From UniProt

complete

involved_in

GO:0046621

negative regulation of organ growth

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q60857
ensembl:ENSMUSP00000104039

P

Seeded From UniProt

complete

involved_in

GO:0045787

positive regulation of cell cycle

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q60857
ensembl:ENSMUSP00000104039

P

Seeded From UniProt

complete

involved_in

GO:0035176

social behavior

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q60857
ensembl:ENSMUSP00000104039

P

Seeded From UniProt

complete

involved_in

GO:0010628

positive regulation of gene expression

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q60857
ensembl:ENSMUSP00000104039

P

Seeded From UniProt

complete

involved_in

GO:0006837

serotonin transport

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q60857
ensembl:ENSMUSP00000104039

P

Seeded From UniProt

complete

enables

GO:0005328

neurotransmitter:sodium symporter activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR037272

F

Seeded From UniProt

complete

enables

GO:0005335

serotonin:sodium symporter activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR013086

F

Seeded From UniProt

complete

part_of

GO:0005887

integral component of plasma membrane

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR013086

C

Seeded From UniProt

complete

involved_in

GO:0006836

neurotransmitter transport

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR013086

P

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000175

C

Seeded From UniProt

complete

involved_in

GO:0006837

serotonin transport

PMID:12220705[20]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0005335

serotonin:sodium symporter activity

PMID:12220705[20]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0006836

neurotransmitter transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0532

P

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

enables

GO:0015293

symporter activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0769

F

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1003
UniProtKB-SubCell:SL-0039

C

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0812

C

Seeded From UniProt

complete

part_of

GO:0005768

endosome

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0967

C

Seeded From UniProt

complete

part_of

GO:0012505

endomembrane system

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0147

C

Seeded From UniProt

complete

part_of

GO:0010008

endosome membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0100

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 Mochizuki, H et al. (2005) Role of C-terminal region in the functional regulation of rat serotonin transporter (SERT). Neurochem. Int. 46 93-105 PubMed GONUTS page
  2. 2.0 2.1 Quick, MW (2003) Regulating the conducting states of a mammalian serotonin transporter. Neuron 40 537-49 PubMed GONUTS page
  3. 3.0 3.1 3.2 3.3 Ozaslan, D et al. (2003) Glycosyl modification facilitates homo- and hetero-oligomerization of the serotonin transporter. A specific role for sialic acid residues. J. Biol. Chem. 278 43991-4000 PubMed GONUTS page
  4. 4.0 4.1 4.2 Kilic, F & Rudnick, G (2000) Oligomerization of serotonin transporter and its functional consequences. Proc. Natl. Acad. Sci. U.S.A. 97 3106-11 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 Haase, J et al. (2001) Regulation of the serotonin transporter by interacting proteins. Biochem. Soc. Trans. 29 722-8 PubMed GONUTS page
  6. Müller, HK et al. (2006) Subcellular redistribution of the serotonin transporter by secretory carrier membrane protein 2. J. Biol. Chem. 281 28901-9 PubMed GONUTS page
  7. 7.0 7.1 7.2 Pickel, VM & Chan, J (1999) Ultrastructural localization of the serotonin transporter in limbic and motor compartments of the nucleus accumbens. J. Neurosci. 19 7356-66 PubMed GONUTS page
  8. 8.0 8.1 Ramamoorthy, S et al. (2007) Phosphorylation of threonine residue 276 is required for acute regulation of serotonin transporter by cyclic GMP. J. Biol. Chem. 282 11639-47 PubMed GONUTS page
  9. O'Reilly, KC et al. (2007) 13-cis-Retinoic acid alters intracellular serotonin, increases 5-HT1A receptor, and serotonin reuptake transporter levels in vitro. Exp. Biol. Med. (Maywood) 232 1195-203 PubMed GONUTS page
  10. 10.0 10.1 Zusso, M et al. (2008) Fluoxetine-induced proliferation and differentiation of neural progenitor cells isolated from rat postnatal cerebellum. Biochem. Pharmacol. 76 391-403 PubMed GONUTS page
  11. Magnani, F et al. (2004) Partitioning of the serotonin transporter into lipid microdomains modulates transport of serotonin. J. Biol. Chem. 279 38770-8 PubMed GONUTS page
  12. Chan, JS et al. (2011) The serotonin transporter plays an important role in male sexual behavior: a study in serotonin transporter knockout rats. J Sex Med 8 97-108 PubMed GONUTS page
  13. Sato, H et al. (2010) Chronic buspirone treatment decreases 5-HT1B receptor densities and the serotonin transporter but increases the density of 5-HT2A receptors in the bulbectomized rat model of depression: an autoradiographic study. Brain Res. 1345 28-44 PubMed GONUTS page
  14. Wanstall, JC et al. (2003) Potentiation of 5-hydroxytryptamine (5-HT) responses by a 5-HT uptake inhibitor in pulmonary and systemic vessels: effects of exposing rats to hypoxia. Naunyn Schmiedebergs Arch. Pharmacol. 368 520-7 PubMed GONUTS page
  15. Rivera, HM et al. (2009) Estradiol increases Pet-1 and serotonin transporter mRNA in the midbrain raphe nuclei of ovariectomized rats. Brain Res. 1259 51-8 PubMed GONUTS page
  16. 16.0 16.1 Schilström, B et al. (2011) Effects of S-citalopram, citalopram, and R-citalopram on the firing patterns of dopamine neurons in the ventral tegmental area, N-methyl-D-aspartate receptor-mediated transmission in the medial prefrontal cortex and cognitive function in the rat. Synapse 65 357-67 PubMed GONUTS page
  17. 17.0 17.1 17.2 Zhang, YW & Rudnick, G (2005) Cysteine-scanning mutagenesis of serotonin transporter intracellular loop 2 suggests an alpha-helical conformation. J. Biol. Chem. 280 30807-13 PubMed GONUTS page
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