RAT:OPN4

Species (Taxon ID)	Rattus norvegicus (Rat). (10116)
Gene Name(s)	Opn4 (ECO:0000312 with RGD:621701)
Protein Name(s)	Melanopsin Opsin-4
External Links
UniProt	Q8R456
EMBL	AY072689
RefSeq	NP_620215.1
UniGene	Rn.54303
ProteinModelPortal	Q8R456
STRING	10116.ENSRNOP00000015642
PRIDE	Q8R456
Ensembl	ENSRNOT00000015642
GeneID	192223
KEGG	rno:192223
UCSC	RGD:621701
CTD	94233
RGD	621701
eggNOG	NOG255465
GeneTree	ENSGT00760000118977
HOGENOM	HOG000264261
HOVERGEN	HBG007871
InParanoid	Q8R456
KO	K04255
OMA	RMAIAQH
OrthoDB	EOG7CNZG2
PhylomeDB	Q8R456
TreeFam	TF324998
Reactome	REACT_252226 REACT_263374
NextBio	622820
PRO	PR:Q8R456
Proteomes	UP000002494
Genevestigator	Q8R456
GO	GO:0016021 GO:0005886 GO:0005502 GO:0008020 GO:0007602 GO:0018298 GO:0042752 GO:0016056 GO:0048511 GO:0007601
InterPro	IPR000276 IPR017452 IPR001760 IPR027430
Pfam	PF00001
PRINTS	PR00237 PR00238
PROSITE	PS00237 PS50262 PS00238

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
involved_in	GO:0042752	regulation of circadian rhythm	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q9QXZ9	P	Seeded From UniProt	complete
enables	GO:0005502	11-cis retinal binding	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q9UHM6	F	Seeded From UniProt	complete
enables	GO:0008020	G protein-coupled photoreceptor activity	PMID:11834834^[1]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
involved_in	GO:0007602	phototransduction	PMID:11834834^[1]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0071482	cellular response to light stimulus	PMID:21873635^[2]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0002940 MGI:MGI:97914 PANTHER:PTN000662115 UniProtKB:D0E2W5 UniProtKB:F1NEY8	P	Seeded From UniProt	complete
enables	GO:0008020	G protein-coupled photoreceptor activity	PMID:21873635^[2]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0002940 FB:FBgn0003249 FB:FBgn0003250 FB:FBgn0014019 FB:FBgn0019940 MGI:MGI:1353425 PANTHER:PTN000662115 RGD:621701 UniProtKB:D0E2W5 UniProtKB:F1NEY2 UniProtKB:F1NEY8 UniProtKB:P02699 UniProtKB:Q9UHM6	F	Seeded From UniProt	complete
involved_in	GO:0007602	phototransduction	PMID:21873635^[2]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0002940 FB:FBgn0014019 FB:FBgn0019940 MGI:MGI:1353425 MGI:MGI:97914 PANTHER:PTN000662115 RGD:621701 UniProtKB:F1RAF0 UniProtKB:Q9UHM6 ZFIN:ZDB-GENE-040724-51 ZFIN:ZDB-GENE-061201-30 ZFIN:ZDB-GENE-081105-91	P	Seeded From UniProt	complete
involved_in	GO:0007186	G protein-coupled receptor signaling pathway	PMID:21873635^[2]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000662115 UniProtKB:P08100 ZFIN:ZDB-GENE-070111-2 ZFIN:ZDB-GENE-080415-3 ZFIN:ZDB-GENE-110622-1	P	Seeded From UniProt	complete
part_of	GO:0005887	integral component of plasma membrane	PMID:21873635^[2]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	MGI:MGI:1929473 PANTHER:PTN000662115 UniProtKB:P02699	C	Seeded From UniProt	complete
involved_in	GO:0009584	detection of visible light	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0008020	P	Seeded From UniProt	complete
involved_in	GO:0009584	detection of visible light	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0008020	P	Seeded From UniProt	complete
involved_in	GO:0009584	detection of visible light	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0008020	P	Seeded From UniProt	complete
involved_in	GO:0009584	detection of visible light	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0008020	P	Seeded From UniProt	complete
involved_in	GO:0042752	regulation of circadian rhythm	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q9QXZ9 ensembl:ENSMUSP00000022331	P	Seeded From UniProt	complete
enables	GO:0008020	G protein-coupled photoreceptor activity	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q9QXZ9 ensembl:ENSMUSP00000022331	F	Seeded From UniProt	complete
involved_in	GO:0007602	phototransduction	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q9QXZ9 ensembl:ENSMUSP00000022331	P	Seeded From UniProt	complete
enables	GO:0008020	G protein-coupled photoreceptor activity	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q9UHM6 ensembl:ENSP00000361141	F	Seeded From UniProt	complete
involved_in	GO:0007602	phototransduction	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q9UHM6 ensembl:ENSP00000361141	P	Seeded From UniProt	complete
enables	GO:0005502	11-cis retinal binding	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q9UHM6 ensembl:ENSP00000361141	F	Seeded From UniProt	complete
enables	GO:0004930	G protein-coupled receptor activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000276	F	Seeded From UniProt	complete
involved_in	GO:0007186	G protein-coupled receptor signaling pathway	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000276 InterPro:IPR001760	P	Seeded From UniProt	complete
involved_in	GO:0007601	visual perception	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR001760	P	Seeded From UniProt	complete
part_of	GO:0016021	integral component of membrane	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000276 InterPro:IPR001760 InterPro:IPR017452	C	Seeded From UniProt	complete
part_of	GO:0016021	integral component of membrane	PMID:11834834^[1]	ECO:0000304	author statement supported by traceable reference used in manual assertion		C	Seeded From UniProt	complete
involved_in	GO:0018298	protein-chromophore linkage	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0157	P	Seeded From UniProt	complete
part_of	GO:0005886	plasma membrane	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-1003 UniProtKB-SubCell:SL-0039	C	Seeded From UniProt	complete
involved_in	GO:0048511	rhythmic process	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0090	P	Seeded From UniProt	complete
involved_in	GO:0050896	response to stimulus	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0716	P	Seeded From UniProt	complete
enables	GO:0009881	photoreceptor activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0600	F	Seeded From UniProt	complete
part_of	GO:0016021	integral component of membrane	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0812	C	Seeded From UniProt	complete
involved_in	GO:0007165	signal transduction	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0807	P	Seeded From UniProt	complete
part_of	GO:0016020	membrane	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0472	C	Seeded From UniProt	complete
enables	GO:0004930	G protein-coupled receptor activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0297	F	Seeded From UniProt	complete
involved_in	GO:0007186	G protein-coupled receptor signaling pathway	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0297	P	Seeded From UniProt	complete
involved_in	GO:0007602	phototransduction	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0681	P	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 Hattar, S et al. (2002) Melanopsin-containing retinal ganglion cells: architecture, projections, and intrinsic photosensitivity. Science 295 1065-70 PubMed GONUTS page
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:11834834-1] 1.0 ^1.1 ^1.2 Hattar, S et al. (2002) Melanopsin-containing retinal ganglion cells: architecture, projections, and intrinsic photosensitivity. Science 295 1065-70 PubMed GONUTS page

[PMID:21873635-2] 2.0 ^2.1 ^2.2 ^2.3 ^2.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

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RAT:OPN4

Contents

Annotations

Notes

References

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