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MOUSE:CIR1A

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Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Cirh1a (synonyms: Kiaa1988, Tex292)
Protein Name(s) Cirhin

Testis-expressed gene 292 protein

External Links
UniProt Q8R2N2
EMBL AK173318
BC018262
BC027399
BC068113
X80433
X80434
CCDS CCDS52664.1
PIR S46930
RefSeq NP_035704.2
XP_006530905.1
UniGene Mm.10665
ProteinModelPortal Q8R2N2
SMR Q8R2N2
BioGrid 204134
IntAct Q8R2N2
PhosphoSite Q8R2N2
MaxQB Q8R2N2
PaxDb Q8R2N2
PRIDE Q8R2N2
Ensembl ENSMUST00000047629
GeneID 21771
KEGG mmu:21771
UCSC uc009ngr.2
CTD 84916
MGI MGI:1096573
eggNOG COG2319
GeneTree ENSGT00390000008662
HOGENOM HOG000095656
HOVERGEN HBG050963
InParanoid Q8R2N2
KO K14548
OMA REFTQFA
OrthoDB EOG7BZVRQ
PhylomeDB Q8R2N2
TreeFam TF313159
ChiTaRS Cirh1a
NextBio 301108
PRO PR:Q8R2N2
Proteomes UP000000589
Bgee Q8R2N2
CleanEx MM_CIRH1A
Genevestigator Q8R2N2
GO GO:0005730
GO:0034455
GO:0044822
GO:0030490
GO:0006355
GO:0006351
Gene3D 2.130.10.10
InterPro IPR015943
IPR001680
IPR017986
Pfam PF00400
SMART SM00320
SUPFAM SSF50978
PROSITE PS50294

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0005730

nucleolus

PMID:16225863[1]

ECO:0000314

C

Figure 2D.

complete
CACAO 4123

part_of

GO:0005694

chromosome

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q969X6

C

Seeded From UniProt

complete

part_of

GO:0001650

fibrillar center

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q969X6

C

Seeded From UniProt

complete

part_of

GO:0034455

t-UTP complex

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q969X6

C

Seeded From UniProt

complete

involved_in

GO:0030490

maturation of SSU-rRNA

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q969X6

P

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q969X6

C

Seeded From UniProt

complete

part_of

GO:0034455

t-UTP complex

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000520350
SGD:S000002732
UniProtKB:Q969X6

C

Seeded From UniProt

complete

part_of

GO:0032040

small-subunit processome

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000520350
SGD:S000002732
UniProtKB:A0A1D8PJD3

C

Seeded From UniProt

complete

part_of

GO:0030686

90S preribosome

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000520350
SGD:S000002732

C

Seeded From UniProt

complete

involved_in

GO:0000462

maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000520350
SGD:S000002732

P

Seeded From UniProt

complete

part_of

GO:0034455

t-UTP complex

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q969X6

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0030490

maturation of SSU-rRNA

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q969X6

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q969X6

P

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q969X6

C

Seeded From UniProt

complete

part_of

GO:0005694

chromosome

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q969X6

C

Seeded From UniProt

complete

part_of

GO:0001650

fibrillar center

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q969X6

C

Seeded From UniProt

complete

part_of

GO:0034455

t-UTP complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q969X6
ensembl:ENSP00000327179

C

Seeded From UniProt

complete

involved_in

GO:0030490

maturation of SSU-rRNA

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q969X6
ensembl:ENSP00000327179

P

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q969X6
ensembl:ENSP00000327179

P

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q969X6
ensembl:ENSP00000327179

C

Seeded From UniProt

complete

part_of

GO:0005694

chromosome

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q969X6
ensembl:ENSP00000327179

C

Seeded From UniProt

complete

part_of

GO:0001650

fibrillar center

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q969X6
ensembl:ENSP00000327179

C

Seeded From UniProt

complete

part_of

GO:0005694

chromosome

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0158
UniProtKB-SubCell:SL-0468

C

Seeded From UniProt

complete

involved_in

GO:0006364

rRNA processing

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0698

P

Seeded From UniProt

complete

involved_in

GO:0042254

ribosome biogenesis

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0690

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539

C

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0188

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Yu, B et al. (2005) Nucleolar localization of cirhin, the protein mutated in North American Indian childhood cirrhosis. Exp. Cell Res. 311 218-28 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page