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MOUSE:ABEC1

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Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Apobec1
Protein Name(s) C->U-editing enzyme APOBEC-1

Apolipoprotein B mRNA-editing enzyme 1

External Links
UniProt P51908
EMBL U21951
U21947
U21948
U21949
U21950
U22262
U22263
U22264
BC003792
CCDS CCDS20498.1
PIR I48249
RefSeq NP_001127863.1
NP_112436.1
XP_006505463.1
XP_006505464.1
UniGene Mm.3333
ProteinModelPortal P51908
SMR P51908
BioGrid 198158
PhosphoSite P51908
MaxQB P51908
PaxDb P51908
PRIDE P51908
Ensembl ENSMUST00000112585
ENSMUST00000112586
ENSMUST00000112587
GeneID 11810
KEGG mmu:11810
UCSC uc009dpk.1
CTD 339
MGI MGI:103298
eggNOG NOG41905
HOGENOM HOG000033766
HOVERGEN HBG050445
InParanoid P51908
KO K16932
OMA NFVNYPP
OrthoDB EOG7NGQCB
PhylomeDB P51908
TreeFam TF331356
Reactome REACT_254064
REACT_256546
NextBio 279679
PRO PR:P51908
Proteomes UP000000589
Bgee P51908
CleanEx MM_APOBEC1
ExpressionAtlas P51908
Genevestigator P51908
GO GO:0005737
GO:0017091
GO:0016814
GO:0008270
GO:0032869
GO:0016554
GO:0051607
GO:0080111
GO:0042158
GO:0042157
GO:0042953
GO:0016556
GO:0006397
GO:0048255
GO:0090310
GO:0042127
GO:0051592
GO:0042493
GO:0045471
GO:0010332
GO:0006970
GO:0010043
InterPro IPR016192
IPR007904
IPR016193
Pfam PF05240
SUPFAM SSF53927
PROSITE PS00903

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0090310

negative regulation of methylation-dependent chromatin silencing

PMID:21496894[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0080111

DNA demethylation

PMID:21496894[1]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P41238

C

Seeded From UniProt

complete

involved_in

GO:0080111

DNA demethylation

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:103298
PANTHER:PTN000355219
UniProtKB:P31941
UniProtKB:Q8IUX4
UniProtKB:Q9GZX7
UniProtKB:Q9NRW3
UniProtKB:Q9Y235

P

Seeded From UniProt

complete

involved_in

GO:0016554

cytidine to uridine editing

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:103298
MGI:MGI:1343178
PANTHER:PTN000355219
RGD:2133
UniProtKB:Q9Y235

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1933111
PANTHER:PTN000355219
RGD:2133
UniProtKB:P31941
UniProtKB:P41238
UniProtKB:Q19Q52
UniProtKB:Q6NTF7
UniProtKB:Q7YR23
UniProtKB:Q8IUX4
UniProtKB:Q96AK3
UniProtKB:Q9GZX7
UniProtKB:Q9HC16
UniProtKB:Q9NRW3

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000355219
RGD:2133
UniProtKB:P31941
UniProtKB:Q6NTF7
UniProtKB:Q9GZX7
UniProtKB:Q9NRW3
UniProtKB:Q9UH17

C

Seeded From UniProt

complete

enables

GO:0004126

cytidine deaminase activity

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1342279
MGI:MGI:1343178
PANTHER:PTN000355219
RGD:2133
UniProtKB:P31941
UniProtKB:Q19Q52
UniProtKB:Q6NTF7
UniProtKB:Q8IUX4
UniProtKB:Q9GZX7
UniProtKB:Q9Y235

F

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000355219
UniProtKB:Q8IUX4
UniProtKB:Q9HC16

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0090366

positive regulation of mRNA modification

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0090209

negative regulation of triglyceride metabolic process

PMID:9240444[3]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:88057

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0070383

DNA cytosine deamination

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0051607

defense response to virus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0051592

response to calcium ion

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0048255

mRNA stabilization

PMID:15480992[4]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045471

response to ethanol

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

P

Seeded From UniProt

complete

enables

GO:0043021

ribonucleoprotein complex binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0042953

lipoprotein transport

PMID:13130124[5]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:88052

P

occurs_in:(CL:0000182)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0042493

response to drug

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0042158

lipoprotein biosynthetic process

PMID:13130124[5]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:88052

P

occurs_in:(CL:0000182)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0042157

lipoprotein metabolic process

PMID:8692961[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2157378

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0042127

regulation of cell population proliferation

PMID:17875695[7]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:88039

P

occurs_in:(EMAPA:32834)

Seeded From UniProt

complete

enables

GO:0035925

mRNA 3'-UTR AU-rich region binding

PMID:15480992[4]

ECO:0000314

direct assay evidence used in manual assertion

F

has_participant:(MGI:MGI:97798)

Seeded From UniProt

complete

enables

GO:0019904

protein domain specific binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0016556

mRNA modification

PMID:9240444[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3664540

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0016556

mRNA modification

PMID:8692961[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2157378

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0016556

mRNA modification

PMID:8626621[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2157186

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0016556

mRNA modification

PMID:10403781[9]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0016556

mRNA modification

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0016554

cytidine to uridine editing

PMID:24916387[10]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1917115
MGI:MGI:2384294

P

has_input:(MGI:MGI:88052)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0016554

cytidine to uridine editing

PMID:8692961[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2157378

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0016554

cytidine to uridine editing

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010332

response to gamma radiation

PMID:15480992[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2157186

P

occurs_in:(EMAPA:32874)

Seeded From UniProt

complete

enables

GO:0008047

enzyme activator activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006970

response to osmotic stress

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006641

triglyceride metabolic process

PMID:9240444[3]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:88057

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P41238

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

C

Seeded From UniProt

complete

enables

GO:0004131

cytosine deaminase activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

F

Seeded From UniProt

complete

enables

GO:0004126

cytidine deaminase activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

F

Seeded From UniProt

complete

enables

GO:0004126

cytidine deaminase activity

GO_REF:0000008

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P38483

F

Seeded From UniProt

complete

enables

GO:0003729

mRNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2133

F

Seeded From UniProt

complete

involved_in

GO:0009972

cytidine deamination

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004126

P

Seeded From UniProt

complete

involved_in

GO:0009972

cytidine deamination

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004126

P

Seeded From UniProt

complete

involved_in

GO:0009972

cytidine deamination

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004126

P

Seeded From UniProt

complete

involved_in

GO:0009972

cytidine deamination

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004126

P

Seeded From UniProt

complete

involved_in

GO:0043085

positive regulation of catalytic activity

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0008047

P

Seeded From UniProt

complete

involved_in

GO:0043085

positive regulation of catalytic activity

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0008047

P

Seeded From UniProt

complete

involved_in

GO:0090366

positive regulation of mRNA modification

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

P

Seeded From UniProt

complete

involved_in

GO:0070383

DNA cytosine deamination

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

P

Seeded From UniProt

complete

involved_in

GO:0051607

defense response to virus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

P

Seeded From UniProt

complete

involved_in

GO:0051592

response to calcium ion

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

P

Seeded From UniProt

complete

involved_in

GO:0045471

response to ethanol

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

P

Seeded From UniProt

complete

enables

GO:0043021

ribonucleoprotein complex binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

F

Seeded From UniProt

complete

involved_in

GO:0042493

response to drug

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

P

Seeded From UniProt

complete

involved_in

GO:0032869

cellular response to insulin stimulus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

P

Seeded From UniProt

complete

enables

GO:0019904

protein domain specific binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

F

Seeded From UniProt

complete

involved_in

GO:0016556

mRNA modification

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

P

Seeded From UniProt

complete

involved_in

GO:0016554

cytidine to uridine editing

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

P

Seeded From UniProt

complete

involved_in

GO:0010043

response to zinc ion

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

P

Seeded From UniProt

complete

enables

GO:0008047

enzyme activator activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

F

Seeded From UniProt

complete

involved_in

GO:0006970

response to osmotic stress

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

C

Seeded From UniProt

complete

enables

GO:0004131

cytosine deaminase activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

F

Seeded From UniProt

complete

enables

GO:0004126

cytidine deaminase activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

F

Seeded From UniProt

complete

enables

GO:0003729

mRNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P38483
ensembl:ENSRNOP00000020735

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P41238
ensembl:ENSP00000229304

C

Seeded From UniProt

complete

enables

GO:0003824

catalytic activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR016193

F

Seeded From UniProt

complete

enables

GO:0008270

zinc ion binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR016192

F

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR016192

F

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

involved_in

GO:0006397

mRNA processing

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0507

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Guo, JU et al. (2011) Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain. Cell 145 423-34 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 2.5 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  3. 3.0 3.1 3.2 Osuga, J et al. (1997) Effects of apo E deficiency on plasma lipid levels in mice lacking APOBEC-1. Biochem. Biophys. Res. Commun. 236 375-8 PubMed GONUTS page
  4. 4.0 4.1 4.2 Anant, S et al. (2004) Apobec-1 protects intestine from radiation injury through posttranscriptional regulation of cyclooxygenase-2 expression. Gastroenterology 127 1139-49 PubMed GONUTS page
  5. 5.0 5.1 Chen, Z et al. (2004) Hepatic secretion of apoB-100 is impaired in hypobetalipoproteinemic mice with an apoB-38.9-specifying allele. J. Lipid Res. 45 155-63 PubMed GONUTS page
  6. 6.0 6.1 6.2 Morrison, JR et al. (1996) Apolipoprotein B RNA editing enzyme-deficient mice are viable despite alterations in lipoprotein metabolism. Proc. Natl. Acad. Sci. U.S.A. 93 7154-9 PubMed GONUTS page
  7. Blanc, V et al. (2007) Deletion of the AU-rich RNA binding protein Apobec-1 reduces intestinal tumor burden in Apc(min) mice. Cancer Res. 67 8565-73 PubMed GONUTS page
  8. Hirano, K et al. (1996) Targeted disruption of the mouse apobec-1 gene abolishes apolipoprotein B mRNA editing and eliminates apolipoprotein B48. J. Biol. Chem. 271 9887-90 PubMed GONUTS page
  9. Liao, W et al. (1999) APOBEC-2, a cardiac- and skeletal muscle-specific member of the cytidine deaminase supergene family. Biochem. Biophys. Res. Commun. 260 398-404 PubMed GONUTS page
  10. Fossat, N et al. (2014) C to U RNA editing mediated by APOBEC1 requires RNA-binding protein RBM47. EMBO Rep. 15 903-10 PubMed GONUTS page