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MOUSE:ABEC1
Contents
Species (Taxon ID) | Mus musculus (Mouse). (10090) | |
Gene Name(s) | Apobec1 | |
Protein Name(s) | C->U-editing enzyme APOBEC-1
Apolipoprotein B mRNA-editing enzyme 1 | |
External Links | ||
UniProt | P51908 | |
EMBL | U21951 U21947 U21948 U21949 U21950 U22262 U22263 U22264 BC003792 | |
CCDS | CCDS20498.1 | |
PIR | I48249 | |
RefSeq | NP_001127863.1 NP_112436.1 XP_006505463.1 XP_006505464.1 | |
UniGene | Mm.3333 | |
ProteinModelPortal | P51908 | |
SMR | P51908 | |
BioGrid | 198158 | |
PhosphoSite | P51908 | |
MaxQB | P51908 | |
PaxDb | P51908 | |
PRIDE | P51908 | |
Ensembl | ENSMUST00000112585 ENSMUST00000112586 ENSMUST00000112587 | |
GeneID | 11810 | |
KEGG | mmu:11810 | |
UCSC | uc009dpk.1 | |
CTD | 339 | |
MGI | MGI:103298 | |
eggNOG | NOG41905 | |
HOGENOM | HOG000033766 | |
HOVERGEN | HBG050445 | |
InParanoid | P51908 | |
KO | K16932 | |
OMA | NFVNYPP | |
OrthoDB | EOG7NGQCB | |
PhylomeDB | P51908 | |
TreeFam | TF331356 | |
Reactome | REACT_254064 REACT_256546 | |
NextBio | 279679 | |
PRO | PR:P51908 | |
Proteomes | UP000000589 | |
Bgee | P51908 | |
CleanEx | MM_APOBEC1 | |
ExpressionAtlas | P51908 | |
Genevestigator | P51908 | |
GO | GO:0005737 GO:0017091 GO:0016814 GO:0008270 GO:0032869 GO:0016554 GO:0051607 GO:0080111 GO:0042158 GO:0042157 GO:0042953 GO:0016556 GO:0006397 GO:0048255 GO:0090310 GO:0042127 GO:0051592 GO:0042493 GO:0045471 GO:0010332 GO:0006970 GO:0010043 | |
InterPro | IPR016192 IPR007904 IPR016193 | |
Pfam | PF05240 | |
SUPFAM | SSF53927 | |
PROSITE | PS00903 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
involved_in |
GO:0090310 |
negative regulation of methylation-dependent chromatin silencing |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0080111 |
DNA demethylation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0080111 |
DNA demethylation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:103298 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0016554 |
cytidine to uridine editing |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:103298 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1933111 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000355219 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0004126 |
cytidine deaminase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1342279 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003723 |
RNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000355219 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0090366 |
positive regulation of mRNA modification |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0090209 |
negative regulation of triglyceride metabolic process |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:88057 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0070383 |
DNA cytosine deamination |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0051607 |
defense response to virus |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0051592 |
response to calcium ion |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0048255 |
mRNA stabilization |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045471 |
response to ethanol |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0043021 |
ribonucleoprotein complex binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0042953 |
lipoprotein transport |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:88052 |
P |
occurs_in:(CL:0000182) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0042493 |
response to drug |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0042158 |
lipoprotein biosynthetic process |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:88052 |
P |
occurs_in:(CL:0000182) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0042157 |
lipoprotein metabolic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2157378 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0042127 |
regulation of cell population proliferation |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:88039 |
P |
occurs_in:(EMAPA:32834) |
Seeded From UniProt |
complete | |
enables |
GO:0035925 |
mRNA 3'-UTR AU-rich region binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_participant:(MGI:MGI:97798) |
Seeded From UniProt |
complete | ||
enables |
GO:0019904 |
protein domain specific binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0016556 |
mRNA modification |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3664540 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0016556 |
mRNA modification |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2157378 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0016556 |
mRNA modification |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2157186 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0016556 |
mRNA modification |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0016556 |
mRNA modification |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0016554 |
cytidine to uridine editing |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1917115 |
P |
has_input:(MGI:MGI:88052) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0016554 |
cytidine to uridine editing |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2157378 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0016554 |
cytidine to uridine editing |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0010332 |
response to gamma radiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2157186 |
P |
occurs_in:(EMAPA:32874) |
Seeded From UniProt |
complete | |
enables |
GO:0008047 |
enzyme activator activity |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0006970 |
response to osmotic stress |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0006641 |
triglyceride metabolic process |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:88057 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0004131 |
cytosine deaminase activity |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0004126 |
cytidine deaminase activity |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0004126 |
cytidine deaminase activity |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003729 |
mRNA binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2133 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0009972 |
cytidine deamination |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004126 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0009972 |
cytidine deamination |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0004126 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0009972 |
cytidine deamination |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0004126 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0009972 |
cytidine deamination |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0004126 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0043085 |
positive regulation of catalytic activity |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0008047 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0043085 |
positive regulation of catalytic activity |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0008047 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090366 |
positive regulation of mRNA modification |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0070383 |
DNA cytosine deamination |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0051607 |
defense response to virus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0051592 |
response to calcium ion |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045471 |
response to ethanol |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0043021 |
ribonucleoprotein complex binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0042493 |
response to drug |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0032869 |
cellular response to insulin stimulus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0019904 |
protein domain specific binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0016556 |
mRNA modification |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0016554 |
cytidine to uridine editing |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0010043 |
response to zinc ion |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0008047 |
enzyme activator activity |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006970 |
response to osmotic stress |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0004131 |
cytosine deaminase activity |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0004126 |
cytidine deaminase activity |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003729 |
mRNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P38483 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P41238 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003824 |
catalytic activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0008270 |
zinc ion binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0016787 |
hydrolase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006397 |
mRNA processing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Guo, JU et al. (2011) Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain. Cell 145 423-34 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 Osuga, J et al. (1997) Effects of apo E deficiency on plasma lipid levels in mice lacking APOBEC-1. Biochem. Biophys. Res. Commun. 236 375-8 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Anant, S et al. (2004) Apobec-1 protects intestine from radiation injury through posttranscriptional regulation of cyclooxygenase-2 expression. Gastroenterology 127 1139-49 PubMed GONUTS page
- ↑ 5.0 5.1 Chen, Z et al. (2004) Hepatic secretion of apoB-100 is impaired in hypobetalipoproteinemic mice with an apoB-38.9-specifying allele. J. Lipid Res. 45 155-63 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 Morrison, JR et al. (1996) Apolipoprotein B RNA editing enzyme-deficient mice are viable despite alterations in lipoprotein metabolism. Proc. Natl. Acad. Sci. U.S.A. 93 7154-9 PubMed GONUTS page
- ↑ Blanc, V et al. (2007) Deletion of the AU-rich RNA binding protein Apobec-1 reduces intestinal tumor burden in Apc(min) mice. Cancer Res. 67 8565-73 PubMed GONUTS page
- ↑ Hirano, K et al. (1996) Targeted disruption of the mouse apobec-1 gene abolishes apolipoprotein B mRNA editing and eliminates apolipoprotein B48. J. Biol. Chem. 271 9887-90 PubMed GONUTS page
- ↑ Liao, W et al. (1999) APOBEC-2, a cardiac- and skeletal muscle-specific member of the cytidine deaminase supergene family. Biochem. Biophys. Res. Commun. 260 398-404 PubMed GONUTS page
- ↑ Fossat, N et al. (2014) C to U RNA editing mediated by APOBEC1 requires RNA-binding protein RBM47. EMBO Rep. 15 903-10 PubMed GONUTS page
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- GO:0042127 ! regulation of cell population proliferation
- GO:0045471 ! response to ethanol
- GO:0051592 ! response to calcium ion
- GO:0042493 ! response to drug
- GO:0010043 ! response to zinc ion
- GO:0010332 ! response to gamma radiation
- GO:0006970 ! response to osmotic stress
- GO:0043021 ! ribonucleoprotein complex binding
- GO:0003723 ! RNA binding
- Rodentia