GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

LACBA:Q03RR4

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Lactobacillus brevis (strain ATCC 367 / JCM 1170). (387344)
Gene Name(s) No Information Provided.
Protein Name(s) Farnesyl-diphosphate synthase (ECO:0000313 with EMBL:ABJ64108.1)
External Links
UniProt Q03RR4
EMBL CP000416
RefSeq WP_011667698.1
YP_795139.1
PDB 3M9U
3PDE
PDBsum 3M9U
3PDE
ProteinModelPortal Q03RR4
STRING 387344.LVIS_0975
DNASU 4413881
EnsemblBacteria ABJ64108
GeneID 4413881
KEGG lbr:LVIS_0975
PATRIC 22200913
eggNOG COG0142
HOGENOM HOG000009101
KO K13789
OMA KDTKLYG
OrthoDB EOG6TN43W
BioCyc LBRE387344:GJ8S-975-MONOMER
EvolutionaryTrace Q03RR4
Proteomes UP000001652
GO GO:0004337
GO:0008299
Gene3D 1.10.600.10
InterPro IPR000092
IPR017446
IPR008949
PANTHER PTHR12001
Pfam PF00348
SUPFAM SSF48576
PROSITE PS00723
PS00444

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0004337

geranyltranstransferase activity

PMID:23493556[1]

ECO:0000314

F

The length of the product produced is given in table S8 in the supplementary information. This protein is GI:116333612. C15 stands for farnesyl diphosphate.

complete
CACAO 10246

GO:0045337

farnesyl diphosphate biosynthetic process

PMID:23493556[1]

ECO:0000314

P

Table S8 in the supplementary information contains the length of the product produced. C15 is farnesyl diphosphate. This protein is GI: 116333612.

complete
CACAO 10247

involved_in

GO:0045337

farnesyl diphosphate biosynthetic process

PMID:23493556[1]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0004337

geranyltranstransferase activity

PMID:23493556[1]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0008299

isoprenoid biosynthetic process

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000092

P

Seeded From UniProt

complete

enables

GO:0004337

geranyltranstransferase activity

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:2.5.1.10

F

Seeded From UniProt

complete

enables

GO:0016740

transferase activity

GO_REF:0000038

ECO:0000323

imported automatically asserted information used in automatic assertion

UniProtKB-KW:KW-0808

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 Wallrapp, FH et al. (2013) Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily. Proc. Natl. Acad. Sci. U.S.A. 110 E1196-202 PubMed GONUTS page