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HV1H2:POL

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Species (Taxon ID) Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)(HIV-1). (11706)
Gene Name(s) gag-pol
Protein Name(s) Gag-Pol polyprotein

Pr160Gag-Pol Matrix protein p17 MA Capsid protein p24 CA Spacer peptide p2 Nucleocapsid protein p7 NC Transframe peptide TF p6-pol p6* Protease PR Retropepsin Reverse transcriptase/ribonuclease H Exoribonuclease H p66 RT p51 RT p15 Integrase IN

External Links
UniProt P04585
EMBL K03455
AF033819
RefSeq NP_057849.4
PDB 1A30
1BV7
1BV9
1BVE
1BVG
1BWA
1BWB
1C0T
1C0U
1C1B
1C1C
1DMP
1DTQ
1DTT
1E6J
1EP4
1ESK
1EX4
1EXQ
1FB7
1FK9
1FKO
1FKP
1G6L
1HIV
1HVH
1HVR
1HWR
1HXB
1JKH
1JLA
1JLB
1JLC
1JLE
1JLF
1JLG
1JLQ
1KLM
1LV1
1LW0
1LW2
1LWC
1LWE
1LWF
1NCP
1O1W
1ODW
1ODY
1QBR
1QBS
1QBT
1QBU
1REV
1RT1
1RT2
1RT3
1RT4
1RT5
1RT6
1RT7
1RTD
1RTH
1RTI
1RTJ
1S1T
1S1U
1S1V
1S1W
1S1X
1T05
1TAM
1TKT
1TKX
1TKZ
1TL1
1TL3
1VRT
1VRU
2HND
2HNY
2HNZ
2KOD
2NPH
2OPP
2OPQ
2OPR
2OPS
2RF2
2RKI
2WHH
2WOM
2WON
2YNF
2YNG
2YNH
2YNI
3AO2
3C6T
3C6U
3DI6
3DLE
3DLG
3DM2
3DMJ
3DOK
3DOL
3DOX
3DRP
3DRR
3DRS
3DYA
3E01
3FFI
3I0R
3I0S
3KJV
3KK1
3KK2
3KK3
3KT2
3KT5
3LAK
3LAL
3LAM
3LAN
3LP0
3LP1
3LP2
3M8P
3M8Q
3MEC
3MED
3MEE
3MEG
3MIM
3N3I
3NBP
3PHV
3QIN
3QIO
3QIP
3T19
3T1A
3TAM
4B3O
4B3P
4B3Q
4I7F
4KSE
4KV8
4NCG
4QLH
PDBsum 1A30
1BV7
1BV9
1BVE
1BVG
1BWA
1BWB
1C0T
1C0U
1C1B
1C1C
1DMP
1DTQ
1DTT
1E6J
1EP4
1ESK
1EX4
1EXQ
1FB7
1FK9
1FKO
1FKP
1G6L
1HIV
1HVH
1HVR
1HWR
1HXB
1JKH
1JLA
1JLB
1JLC
1JLE
1JLF
1JLG
1JLQ
1KLM
1LV1
1LW0
1LW2
1LWC
1LWE
1LWF
1NCP
1O1W
1ODW
1ODY
1QBR
1QBS
1QBT
1QBU
1REV
1RT1
1RT2
1RT3
1RT4
1RT5
1RT6
1RT7
1RTD
1RTH
1RTI
1RTJ
1S1T
1S1U
1S1V
1S1W
1S1X
1T05
1TAM
1TKT
1TKX
1TKZ
1TL1
1TL3
1VRT
1VRU
2HND
2HNY
2HNZ
2KOD
2NPH
2OPP
2OPQ
2OPR
2OPS
2RF2
2RKI
2WHH
2WOM
2WON
2YNF
2YNG
2YNH
2YNI
3AO2
3C6T
3C6U
3DI6
3DLE
3DLG
3DM2
3DMJ
3DOK
3DOL
3DOX
3DRP
3DRR
3DRS
3DYA
3E01
3FFI
3I0R
3I0S
3KJV
3KK1
3KK2
3KK3
3KT2
3KT5
3LAK
3LAL
3LAM
3LAN
3LP0
3LP1
3LP2
3M8P
3M8Q
3MEC
3MED
3MEE
3MEG
3MIM
3N3I
3NBP
3PHV
3QIN
3QIO
3QIP
3T19
3T1A
3TAM
4B3O
4B3P
4B3Q
4I7F
4KSE
4KV8
4NCG
4QLH
ProteinModelPortal P04585
SMR P04585
IntAct P04585
MINT MINT-111862
BindingDB P04585
GeneID 155348
Reactome REACT_6266
REACT_6359
REACT_6818
REACT_6866
REACT_6903
REACT_6918
REACT_6965
REACT_7991
REACT_8990
REACT_9037
REACT_9055
REACT_9058
REACT_9406
SABIO-RK P04585
EvolutionaryTrace P04585
Proteomes UP000002241
GO GO:0030430
GO:0042025
GO:0020002
GO:0016020
GO:0019013
GO:0004190
GO:0003677
GO:0003887
GO:0004533
GO:0042802
GO:0003723
GO:0003964
GO:0004523
GO:0005198
GO:0008270
GO:0015074
GO:0006310
GO:0030260
GO:0075713
GO:0039651
GO:0006278
GO:0039657
GO:0019061
GO:0046718
GO:0019058
GO:0075732
GO:0016032
GO:0019076
GO:0019068
Gene3D 1.10.10.200
1.10.1200.30
1.10.150.90
1.10.375.10
2.30.30.10
2.40.70.10
3.30.420.10
4.10.60.10
InterPro IPR001969
IPR000721
IPR001037
IPR001584
IPR017856
IPR003308
IPR000071
IPR012344
IPR018061
IPR001995
IPR021109
IPR008916
IPR008919
IPR010999
IPR012337
IPR002156
IPR000477
IPR010659
IPR010661
IPR001878
Pfam PF00540
PF00607
PF00552
PF02022
PF00075
PF00665
PF00077
PF00078
PF06815
PF06817
PF00098
PRINTS PR00234
SMART SM00343
SUPFAM SSF46919
SSF47353
SSF47836
SSF47943
SSF50122
SSF50630
SSF53098
SSF57756
PROSITE PS50175
PS00141
PS50994
PS51027
PS50879
PS50878
PS50158
PS50876

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

enables

GO:0008270

zinc ion binding

PMID:1639074[1]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:22804908[2]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P04585

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:21156026[3]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P04585

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:20227411[4]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P04585

F

Seeded From UniProt

complete

involved_in

GO:0090305

nucleic acid phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004519

P

Seeded From UniProt

complete

involved_in

GO:0090305

nucleic acid phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004518

P

Seeded From UniProt

complete

involved_in

GO:0090502

RNA phosphodiester bond hydrolysis, endonucleolytic

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004523

P

Seeded From UniProt

complete

involved_in

GO:0090503

RNA phosphodiester bond hydrolysis, exonucleolytic

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004533

P

Seeded From UniProt

complete

enables

GO:0003676

nucleic acid binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001037
InterPro:IPR001878
InterPro:IPR002156
InterPro:IPR036397
InterPro:IPR036862
InterPro:IPR036875

F

Seeded From UniProt

complete

enables

GO:0003964

RNA-directed DNA polymerase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR010659
InterPro:IPR010661

F

Seeded From UniProt

complete

enables

GO:0004190

aspartic-type endopeptidase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001969
InterPro:IPR001995

F

Seeded From UniProt

complete

enables

GO:0004523

RNA-DNA hybrid ribonuclease activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002156

F

Seeded From UniProt

complete

enables

GO:0005198

structural molecule activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000071

F

Seeded From UniProt

complete

involved_in

GO:0006278

RNA-dependent DNA biosynthetic process

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR010659
InterPro:IPR010661

P

Seeded From UniProt

complete

involved_in

GO:0006508

proteolysis

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001969
InterPro:IPR001995

P

Seeded From UniProt

complete

enables

GO:0008270

zinc ion binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001878
InterPro:IPR003308
InterPro:IPR036875

F

Seeded From UniProt

complete

involved_in

GO:0015074

DNA integration

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001584

P

Seeded From UniProt

complete

involved_in

GO:0016032

viral process

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000721
InterPro:IPR008919

P

Seeded From UniProt

complete

enables

GO:0004533

exoribonuclease H activity

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:3.1.13.2

F

Seeded From UniProt

complete

enables

GO:0003887

DNA-directed DNA polymerase activity

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:2.7.7.7

F

Seeded From UniProt

complete

enables

GO:0003964

RNA-directed DNA polymerase activity

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:2.7.7.49

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:2162350[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:19914170[6]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:19914170[6]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P04585:PRO_0000042440

F

Seeded From UniProt

complete

involved_in

GO:0019072

viral genome packaging

PMID:18343475[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0075713

establishment of integrated proviral latency

Reactome:R-HSA-175567
Reactome:R-HSA-162592

ECO:0000304

author statement supported by traceable reference used in manual assertion


P

Seeded From UniProt

complete

involved_in

GO:0051169

nuclear transport

Reactome:R-HSA-162590

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0030260

entry into host cell

Reactome:R-HSA-173107

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0019068

virion assembly

Reactome:R-HSA-175474

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0019064

fusion of virus membrane with host plasma membrane

Reactome:R-HSA-164524

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0019061

uncoating of virus

Reactome:R-HSA-173771
Reactome:R-HSA-162585

ECO:0000304

author statement supported by traceable reference used in manual assertion


P

Seeded From UniProt

complete

involved_in

GO:0019058

viral life cycle

Reactome:R-HSA-162588

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0008907

integrase activity

Reactome:R-HSA-164523

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0008233

peptidase activity

Reactome:R-HSA-3139027

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0006278

RNA-dependent DNA biosynthetic process

Reactome:R-HSA-182876
Reactome:R-HSA-164527
Reactome:R-HSA-164525
Reactome:R-HSA-164516

ECO:0000304

author statement supported by traceable reference used in manual assertion




P

Seeded From UniProt

complete

involved_in

GO:0075732

viral penetration into host nucleus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1163

P

Seeded From UniProt

complete

involved_in

GO:0039651

induction by virus of host cysteine-type endopeptidase activity involved in apoptotic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1073

P

Seeded From UniProt

complete

involved_in

GO:0044826

viral genome integration into host DNA

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1179

P

Seeded From UniProt

complete

part_of

GO:0020002

host cell plasma membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1032
UniProtKB-SubCell:SL-0375

C

Seeded From UniProt

complete

part_of

GO:0033644

host cell membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1043

C

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

enables

GO:0004190

aspartic-type endopeptidase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0064

F

Seeded From UniProt

complete

enables

GO:0008289

lipid binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0446

F

Seeded From UniProt

complete

enables

GO:0003887

DNA-directed DNA polymerase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0239

F

Seeded From UniProt

complete

involved_in

GO:0039526

modulation by virus of host apoptotic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1119

P

Seeded From UniProt

complete

part_of

GO:0044174

host cell endosome

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1039

C

Seeded From UniProt

complete

part_of

GO:0030430

host cell cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1035
UniProtKB-SubCell:SL-0381

C

Seeded From UniProt

complete

involved_in

GO:0008152

metabolic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0511

P

Seeded From UniProt

complete

involved_in

GO:0039657

suppression by virus of host gene expression

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1190

P

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

enables

GO:0003824

catalytic activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0511

F

Seeded From UniProt

complete

enables

GO:0008233

peptidase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0645

F

Seeded From UniProt

complete

enables

GO:0004519

endonuclease activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0255

F

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0233

P

Seeded From UniProt

complete

enables

GO:0016740

transferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0808

F

Seeded From UniProt

complete

involved_in

GO:0075713

establishment of integrated proviral latency

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1179

P

Seeded From UniProt

complete

involved_in

GO:0006508

proteolysis

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0645

P

Seeded From UniProt

complete

part_of

GO:0019012

virion

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0946
UniProtKB-SubCell:SL-0274

C

Seeded From UniProt

complete

enables

GO:0004518

nuclease activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0540

F

Seeded From UniProt

complete

involved_in

GO:0046718

viral entry into host cell

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1160

P

Seeded From UniProt

complete

part_of

GO:0042025

host cell nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1048
UniProtKB-SubCell:SL-0414

C

Seeded From UniProt

complete

involved_in

GO:0016032

viral process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0945

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

enables

GO:0016779

nucleotidyltransferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0548

F

Seeded From UniProt

complete

part_of

GO:0019028

viral capsid

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0167

C

Seeded From UniProt

complete

enables

GO:0003964

RNA-directed DNA polymerase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0695

F

Seeded From UniProt

complete

involved_in

GO:0015074

DNA integration

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0229

P

Seeded From UniProt

complete

part_of

GO:0019013

viral nucleocapsid

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0543

C

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0694

F

Seeded From UniProt

complete

part_of

GO:0055036

virion membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0275

C

Seeded From UniProt

complete

part_of

GO:0072494

host multivesicular body

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0453

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Morellet, N et al. (1992) Determination of the structure of the nucleocapsid protein NCp7 from the human immunodeficiency virus type 1 by 1H NMR. EMBO J. 11 3059-65 PubMed GONUTS page
  2. Matúz, K et al. (2012) Inhibition of XMRV and HIV-1 proteases by pepstatin A and acetyl-pepstatin. FEBS J. 279 3276-86 PubMed GONUTS page
  3. Levin, A et al. (2011) Peptides that bind the HIV-1 integrase and modulate its enzymatic activity--kinetic studies and mode of action. FEBS J. 278 316-30 PubMed GONUTS page
  4. Wielens, J et al. (2010) Crystal structure of the HIV-1 integrase core domain in complex with sucrose reveals details of an allosteric inhibitory binding site. FEBS Lett. 584 1455-62 PubMed GONUTS page
  5. Weber, IT (1990) Comparison of the crystal structures and intersubunit interactions of human immunodeficiency and Rous sarcoma virus proteases. J. Biol. Chem. 265 10492-6 PubMed GONUTS page
  6. 6.0 6.1 Byeon, IJ et al. (2009) Structural convergence between Cryo-EM and NMR reveals intersubunit interactions critical for HIV-1 capsid function. Cell 139 780-90 PubMed GONUTS page
  7. Kafaie, J et al. (2008) Mapping of nucleocapsid residues important for HIV-1 genomic RNA dimerization and packaging. Virology 375 592-610 PubMed GONUTS page