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HUMAN:VIGLN
Contents
| Species (Taxon ID) | Homo sapiens (Human). (9606) | |
| Gene Name(s) | HDLBP (synonyms: HBP, VGL) | |
| Protein Name(s) | Vigilin
High density lipoprotein-binding protein HDL-binding protein | |
| External Links | ||
| UniProt | Q00341 | |
| EMBL | M64098 AK300312 AC104841 BC001179 | |
| CCDS | CCDS2547.1 CCDS58760.1 | |
| PIR | A44125 | |
| RefSeq | NP_001230829.1 NP_005327.1 NP_976221.1 XP_005247057.2 XP_005247058.2 XP_005247059.2 XP_005247060.2 XP_006712538.1 | |
| UniGene | Hs.471851 Hs.732361 | |
| PDB | 1VIG 1VIH 2CTE 2CTF 2CTJ 2CTK 2CTL 2CTM | |
| PDBsum | 1VIG 1VIH 2CTE 2CTF 2CTJ 2CTK 2CTL 2CTM | |
| ProteinModelPortal | Q00341 | |
| SMR | Q00341 | |
| BioGrid | 109319 | |
| IntAct | Q00341 | |
| MINT | MINT-1189333 | |
| STRING | 9606.ENSP00000312042 | |
| PhosphoSite | Q00341 | |
| DMDM | 218511884 | |
| MaxQB | Q00341 | |
| PaxDb | Q00341 | |
| PeptideAtlas | Q00341 | |
| PRIDE | Q00341 | |
| DNASU | 3069 | |
| Ensembl | ENST00000427183 | |
| GeneID | 3069 | |
| KEGG | hsa:3069 | |
| UCSC | uc002waz.3 | |
| CTD | 3069 | |
| GeneCards | GC02M242166 | |
| HGNC | HGNC:4857 | |
| HPA | CAB026457 HPA004189 | |
| MIM | 142695 | |
| neXtProt | NX_Q00341 | |
| PharmGKB | PA29235 | |
| eggNOG | NOG313207 | |
| GeneTree | ENSGT00720000108747 | |
| HOGENOM | HOG000007687 | |
| HOVERGEN | HBG054107 | |
| InParanoid | Q00341 | |
| OMA | VVREAPW | |
| OrthoDB | EOG7KH9HW | |
| PhylomeDB | Q00341 | |
| TreeFam | TF323767 | |
| ChiTaRS | HDLBP | |
| EvolutionaryTrace | Q00341 | |
| GeneWiki | HDLBP | |
| GenomeRNAi | 3069 | |
| NextBio | 12141 | |
| PRO | PR:Q00341 | |
| Proteomes | UP000005640 | |
| Bgee | Q00341 | |
| CleanEx | HS_HDLBP | |
| ExpressionAtlas | Q00341 | |
| Genevestigator | Q00341 | |
| GO | GO:0005737 GO:0034364 GO:0005634 GO:0005886 GO:0008289 GO:0044822 GO:0008203 GO:0006869 | |
| Gene3D | 3.30.1370.10 | |
| InterPro | IPR004087 IPR004088 | |
| Pfam | PF00013 | |
| SMART | SM00322 | |
| SUPFAM | SSF54791 | |
| PROSITE | PS50084 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
enables |
GO:0045296 |
cadherin binding |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003723 |
RNA binding |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003723 |
RNA binding |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003676 |
nucleic acid binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008289 |
lipid binding |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0008203 |
cholesterol metabolic process |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
PMID:1318310[4] |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
|
involved_in |
GO:0034384 |
high-density lipoprotein particle clearance |
Reactome:R-HSA-8964011 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0008203 |
cholesterol metabolic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0008202 |
steroid metabolic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006869 |
lipid transport |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0034364 |
high-density lipoprotein particle |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006629 |
lipid metabolic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Guo, Z et al. (2014) E-cadherin interactome complexity and robustness resolved by quantitative proteomics. Sci Signal 7 rs7 PubMed GONUTS page
- ↑ Castello, A et al. (2012) Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell 149 1393-406 PubMed GONUTS page
- ↑ Baltz, AG et al. (2012) The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Mol. Cell 46 674-90 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 McKnight, GL et al. (1992) Cloning and expression of a cellular high density lipoprotein-binding protein that is up-regulated by cholesterol loading of cells. J. Biol. Chem. 267 12131-41 PubMed GONUTS page
