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HUMAN:NIPBL

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Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) NIPBL (synonyms: IDN3)
Protein Name(s) Nipped-B-like protein

Delangin SCC2 homolog

External Links
UniProt Q6KC79
EMBL AJ627032
AJ640137
BX538177
BX538178
BX640644
AK126804
AB019494
AB019602
BC033847
CCDS CCDS3920.1
CCDS47198.1
RefSeq NP_056199.2
NP_597677.2
XP_005248340.1
UniGene Hs.481927
ProteinModelPortal Q6KC79
SMR Q6KC79
BioGrid 117363
DIP DIP-29199N
IntAct Q6KC79
MINT MINT-4103787
STRING 9606.ENSP00000282516
PhosphoSite Q6KC79
DMDM 50400865
MaxQB Q6KC79
PaxDb Q6KC79
PRIDE Q6KC79
Ensembl ENST00000282516
ENST00000448238
GeneID 25836
KEGG hsa:25836
UCSC uc003jkk.4
uc003jkl.4
uc003jkm.1
CTD 25836
GeneCards GC05P036876
GeneReviews NIPBL
HGNC HGNC:28862
HPA HPA040834
MIM 122470
608667
neXtProt NX_Q6KC79
Orphanet 329802
199
PharmGKB PA134962343
eggNOG NOG128278
GeneTree ENSGT00390000010427
HOVERGEN HBG052626
InParanoid Q6KC79
KO K06672
OMA KQKGESR
OrthoDB EOG7CZK4Q
PhylomeDB Q6KC79
TreeFam TF313121
Reactome REACT_150421
ChiTaRS NIPBL
GeneWiki NIPBL
GenomeRNAi 25836
NextBio 47141
PRO PR:Q6KC79
Proteomes UP000005640
Bgee Q6KC79
CleanEx HS_NIPBL
ExpressionAtlas Q6KC79
Genevestigator Q6KC79
GO GO:0070062
GO:0005654
GO:0005634
GO:0032116
GO:0003682
GO:0070087
GO:0042826
GO:0008022
GO:0047485
GO:0007420
GO:0034613
GO:0006974
GO:0071481
GO:0050890
GO:0048589
GO:0042471
GO:0048557
GO:0035115
GO:0048703
GO:0035261
GO:0048592
GO:0060325
GO:0045444
GO:0035136
GO:0061010
GO:0003007
GO:0034088
GO:0001656
GO:0000278
GO:0007064
GO:0000122
GO:0045892
GO:0003151
GO:0031065
GO:0040018
GO:0045778
GO:0048638
GO:0045995
GO:0042634
GO:0007605
GO:0019827
GO:0061038
Gene3D 1.25.10.10
InterPro IPR011989
IPR016024
IPR026003
IPR024986
Pfam PF12765
PF12830
SUPFAM SSF48371

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

part_of

GO:0090694

Scc2-Scc4 cohesin loading complex

PMID:22628566[1]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0071921

cohesin loading

PMID:22628566[1]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0032039

integrator complex

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q6KCD5

C

Seeded From UniProt

complete

involved_in

GO:2001224

positive regulation of neuron migration

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q6KCD5

P

Seeded From UniProt

complete

part_of

GO:0070062

extracellular exosome

PMID:19056867[2]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(UBERON:0001088)

Seeded From UniProt

complete

enables

GO:0070087

chromo shadow domain binding

PMID:15882967[3]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P45973

F

Seeded From UniProt

complete

involved_in

GO:0061038

uterus morphogenesis

PMID:19242925[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0061010

gall bladder development

PMID:19242925[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0060325

face morphogenesis

PMID:19242925[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0060325

face morphogenesis

PMID:15146186[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0050890

cognition

PMID:15146186[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048638

regulation of developmental growth

PMID:19242925[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048592

eye morphogenesis

PMID:8291537[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048589

developmental growth

PMID:15146186[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048557

embryonic digestive tract morphogenesis

PMID:19242925[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048557

embryonic digestive tract morphogenesis

PMID:8291537[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045995

regulation of embryonic development

PMID:19242925[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

PMID:18854353[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0042826

histone deacetylase binding

PMID:18854353[7]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:O15379

F

Seeded From UniProt

complete

enables

GO:0042826

histone deacetylase binding

PMID:18854353[7]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q13547

F

Seeded From UniProt

complete

involved_in

GO:0042634

regulation of hair cycle

PMID:15146186[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0042471

ear morphogenesis

PMID:8291537[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0035261

external genitalia morphogenesis

PMID:19242925[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0035261

external genitalia morphogenesis

PMID:15146186[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0035136

forelimb morphogenesis

PMID:15146186[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0035115

embryonic forelimb morphogenesis

PMID:19242925[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0035115

embryonic forelimb morphogenesis

PMID:8291537[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0031065

positive regulation of histone deacetylation

PMID:18854353[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007605

sensory perception of sound

PMID:15146186[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007420

brain development

PMID:8291537[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0003151

outflow tract morphogenesis

PMID:19242925[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0003007

heart morphogenesis

PMID:8291537[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0001656

metanephros development

PMID:15146185[8]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:18854353[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0071481

cellular response to X-ray

PMID:17468178[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0047485

protein N-terminus binding

PMID:16802858[10]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q9Y6X3

F

Seeded From UniProt

complete

involved_in

GO:0034613

cellular protein localization

PMID:17468178[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0034088

maintenance of mitotic sister chromatid cohesion

PMID:16682347[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0032116

SMC loading complex

PMID:16682347[11]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0008022

protein C-terminus binding

PMID:17577209[12]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q9BQA5

F

Seeded From UniProt

complete

involved_in

GO:0007064

mitotic sister chromatid cohesion

PMID:16100726[13]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

PMID:17468178[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:16802858[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:1990414

replication-born double-strand break repair via sister chromatid exchange

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000496017
SGD:S000002588

P

Seeded From UniProt

complete

involved_in

GO:1905406

positive regulation of mitotic cohesin loading

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000496017
PomBase:SPAC31A2.05c

P

Seeded From UniProt

complete

part_of

GO:0090694

Scc2-Scc4 cohesin loading complex

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000496017
PomBase:SPAC31A2.05c
UniProtKB:Q6KC79

C

Seeded From UniProt

complete

involved_in

GO:0071733

transcriptional activation by promoter-enhancer looping

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0026401
PANTHER:PTN000496017
ZFIN:ZDB-GENE-030131-6070
ZFIN:ZDB-GENE-060526-121

P

Seeded From UniProt

complete

involved_in

GO:0071169

establishment of protein localization to chromatin

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000496017
SGD:S000002588

P

Seeded From UniProt

complete

involved_in

GO:0070550

rDNA condensation

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000496017
SGD:S000002588

P

Seeded From UniProt

complete

involved_in

GO:0048703

embryonic viscerocranium morphogenesis

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1913976
PANTHER:PTN000496024

P

Seeded From UniProt

complete

involved_in

GO:0034087

establishment of mitotic sister chromatid cohesion

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000496017
SGD:S000002588

P

Seeded From UniProt

complete

involved_in

GO:0007507

heart development

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1913976
PANTHER:PTN000496024

P

Seeded From UniProt

complete

involved_in

GO:0007420

brain development

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000496024
UniProtKB:Q6KC79

P

Seeded From UniProt

complete

involved_in

GO:0007076

mitotic chromosome condensation

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000496017
SGD:S000002588

P

Seeded From UniProt

complete

involved_in

GO:0007064

mitotic sister chromatid cohesion

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0026401
PANTHER:PTN000496017
UniProtKB:Q6KC79

P

Seeded From UniProt

complete

involved_in

GO:0006302

double-strand break repair

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000496017
SGD:S000002588

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0026401
MGI:MGI:1913976
PANTHER:PTN000496017
SGD:S000002588
UniProtKB:Q6KC79

C

Seeded From UniProt

complete

enables

GO:0003682

chromatin binding

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0026401
MGI:MGI:1913976
PANTHER:PTN000496017

F

Seeded From UniProt

complete

involved_in

GO:0003007

heart morphogenesis

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000496024
UniProtKB:Q6KC79

P

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000496017
SGD:S000002588

C

Seeded From UniProt

complete

part_of

GO:0000785

chromatin

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1913976
PANTHER:PTN000496017

C

Seeded From UniProt

complete

part_of

GO:0000228

nuclear chromosome

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000496017
PomBase:SPAC31A2.05c

C

Seeded From UniProt

complete

involved_in

GO:2001224

positive regulation of neuron migration

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

P

Seeded From UniProt

complete

involved_in

GO:0071921

cohesin loading

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

P

Seeded From UniProt

complete

involved_in

GO:0048703

embryonic viscerocranium morphogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

P

Seeded From UniProt

complete

involved_in

GO:0048701

embryonic cranial skeleton morphogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

P

Seeded From UniProt

complete

involved_in

GO:0045778

positive regulation of ossification

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

P

Seeded From UniProt

complete

involved_in

GO:0045444

fat cell differentiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

P

Seeded From UniProt

complete

involved_in

GO:0040018

positive regulation of multicellular organism growth

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

P

Seeded From UniProt

complete

enables

GO:0036033

mediator complex binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

F

Seeded From UniProt

complete

part_of

GO:0032039

integrator complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

C

Seeded From UniProt

complete

involved_in

GO:0019827

stem cell population maintenance

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

P

Seeded From UniProt

complete

involved_in

GO:0007507

heart development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

P

Seeded From UniProt

complete

involved_in

GO:0006357

regulation of transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

C

Seeded From UniProt

complete

enables

GO:0003682

chromatin binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

F

Seeded From UniProt

complete

part_of

GO:0000785

chromatin

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6KCD5
ensembl:ENSMUSP00000059385

C

Seeded From UniProt

complete

enables

GO:0003682

chromatin binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033031

F

Seeded From UniProt

complete

involved_in

GO:0010468

regulation of gene expression

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033031

P

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

Reactome:R-HSA-2470935

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0217

P

Seeded From UniProt

complete

part_of

GO:0005694

chromosome

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0158
UniProtKB-SubCell:SL-0468

C

Seeded From UniProt

complete

involved_in

GO:0007049

cell cycle

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0131

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Bermudez, VP et al. (2012) In vitro loading of human cohesin on DNA by the human Scc2-Scc4 loader complex. Proc. Natl. Acad. Sci. U.S.A. 109 9366-71 PubMed GONUTS page
  2. Gonzales, PA et al. (2009) Large-scale proteomics and phosphoproteomics of urinary exosomes. J. Am. Soc. Nephrol. 20 363-79 PubMed GONUTS page
  3. Lechner, MS et al. (2005) The mammalian heterochromatin protein 1 binds diverse nuclear proteins through a common motif that targets the chromoshadow domain. Biochem. Biophys. Res. Commun. 331 929-37 PubMed GONUTS page
  4. 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 Chong, K et al. (2009) Cornelia de Lange syndrome (CdLS): prenatal and autopsy findings. Prenat. Diagn. 29 489-94 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 5.4 5.5 5.6 Krantz, ID et al. (2004) Cornelia de Lange syndrome is caused by mutations in NIPBL, the human homolog of Drosophila melanogaster Nipped-B. Nat. Genet. 36 631-5 PubMed GONUTS page
  6. 6.0 6.1 6.2 6.3 6.4 6.5 Jackson, L et al. (1993) de Lange syndrome: a clinical review of 310 individuals. Am. J. Med. Genet. 47 940-6 PubMed GONUTS page
  7. 7.0 7.1 7.2 7.3 7.4 Jahnke, P et al. (2008) The Cohesin loading factor NIPBL recruits histone deacetylases to mediate local chromatin modifications. Nucleic Acids Res. 36 6450-8 PubMed GONUTS page
  8. Tonkin, ET et al. (2004) NIPBL, encoding a homolog of fungal Scc2-type sister chromatid cohesion proteins and fly Nipped-B, is mutated in Cornelia de Lange syndrome. Nat. Genet. 36 636-41 PubMed GONUTS page
  9. 9.0 9.1 9.2 Vrouwe, MG et al. (2007) Increased DNA damage sensitivity of Cornelia de Lange syndrome cells: evidence for impaired recombinational repair. Hum. Mol. Genet. 16 1478-87 PubMed GONUTS page
  10. 10.0 10.1 Seitan, VC et al. (2006) Metazoan Scc4 homologs link sister chromatid cohesion to cell and axon migration guidance. PLoS Biol. 4 e242 PubMed GONUTS page
  11. 11.0 11.1 Watrin, E et al. (2006) Human Scc4 is required for cohesin binding to chromatin, sister-chromatid cohesion, and mitotic progression. Curr. Biol. 16 863-74 PubMed GONUTS page
  12. Miele, A et al. (2007) The interactome of the histone gene regulatory factor HiNF-P suggests novel cell cycle related roles in transcriptional control and RNA processing. J. Cell. Biochem. 102 136-48 PubMed GONUTS page
  13. Kaur, M et al. (2005) Precocious sister chromatid separation (PSCS) in Cornelia de Lange syndrome. Am. J. Med. Genet. A 138 27-31 PubMed GONUTS page
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