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HUMAN:H2AX
Contents
Species (Taxon ID) | Homo sapiens (Human). (9606) | |
Gene Name(s) | H2AFX (synonyms: H2AX) | |
Protein Name(s) | Histone H2AX
H2a/x Histone H2A.X | |
External Links | ||
UniProt | P16104 | |
EMBL | X14850 CR457079 DQ015918 BC004915 BC011694 BC013416 | |
CCDS | CCDS8410.1 | |
PIR | S07631 | |
RefSeq | NP_002096.1 | |
UniGene | Hs.477879 | |
PDB | 1YDP 2AZM 2D31 2DYP 3SHV 3SQD 3SZM 3U3Z | |
PDBsum | 1YDP 2AZM 2D31 2DYP 3SHV 3SQD 3SZM 3U3Z | |
ProteinModelPortal | P16104 | |
SMR | P16104 | |
BioGrid | 109268 | |
DIP | DIP-33604N | |
IntAct | P16104 | |
MINT | MINT-1338182 | |
STRING | 9606.ENSP00000364310 | |
PhosphoSite | P16104 | |
DMDM | 121992 | |
MaxQB | P16104 | |
PaxDb | P16104 | |
PRIDE | P16104 | |
Ensembl | ENST00000375167 ENST00000530167 | |
GeneID | 3014 | |
KEGG | hsa:3014 | |
UCSC | uc001pvg.3 | |
CTD | 3014 | |
GeneCards | GC11M118964 | |
HGNC | HGNC:4739 | |
HPA | CAB012264 | |
MIM | 601772 | |
neXtProt | NX_P16104 | |
PharmGKB | PA29116 | |
eggNOG | COG5262 | |
GeneTree | ENSGT00760000118934 | |
HOGENOM | HOG000234652 | |
HOVERGEN | HBG009342 | |
InParanoid | P16104 | |
KO | K11251 | |
OMA | TVGPKTP | |
OrthoDB | EOG7M0NTR | |
PhylomeDB | P16104 | |
TreeFam | TF300137 | |
Reactome | REACT_169168 REACT_169185 REACT_169436 REACT_172744 REACT_1884 REACT_1924 REACT_200753 REACT_200808 REACT_200827 REACT_200856 REACT_2204 REACT_22186 REACT_2232 REACT_228108 REACT_267652 REACT_267668 REACT_27271 REACT_486 REACT_75792 REACT_75925 REACT_7963 REACT_97 | |
ChiTaRS | H2AFX | |
EvolutionaryTrace | P16104 | |
GeneWiki | H2AFX | |
GenomeRNAi | 3014 | |
NextBio | 11948 | |
PRO | PR:P16104 | |
Proteomes | UP000005640 | |
Bgee | P16104 | |
CleanEx | HS_H2AFX | |
Genevestigator | P16104 | |
GO | GO:0000794 GO:0070062 GO:0001673 GO:0000790 GO:0005654 GO:0000786 GO:0005634 GO:0005657 GO:0035861 GO:0001741 GO:0003684 GO:0003677 GO:0019899 GO:0042393 GO:0006974 GO:0000077 GO:0006281 GO:0006302 GO:0000724 GO:0051321 GO:0006334 GO:0045739 GO:0010212 GO:0007283 | |
Gene3D | 1.10.20.10 | |
InterPro | IPR009072 IPR007125 IPR002119 | |
Pfam | PF00125 | |
PRINTS | PR00620 | |
SMART | SM00414 | |
SUPFAM | SSF47113 | |
PROSITE | PS00046 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
part_of |
GO:0090734 |
site of DNA damage |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
C |
part_of:(GO:0005634) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
occurs_at:(GO:0005634) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005813 |
centrosome |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
C |
part_of:(GO:0006974) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0070062 |
extracellular exosome |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
part_of:(CL:0000019) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
exists_during:(GO:0006974) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
colocalizes_with |
GO:0000781 |
chromosome, telomeric region |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045739 |
positive regulation of DNA repair |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0042393 |
histone binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0019899 |
enzyme binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0010212 |
response to ionizing radiation |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006334 |
nucleosome assembly |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006302 |
double-strand break repair |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000303 |
author statement without traceable support used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000077 |
DNA damage checkpoint |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000605098 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006325 |
chromatin organization |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2448285 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
CGD:CAL0000179664 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:102688 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0035861 |
site of double-strand break |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0016607 |
nuclear speck |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0090398 |
cellular senescence |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:D3ZXP3 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0071480 |
cellular response to gamma radiation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:D3ZXP3 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0021987 |
cerebral cortex development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:D3ZXP3 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007283 |
spermatogenesis |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:D3ZXP3 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:D3ZXP3 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0035861 |
site of double-strand break |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P27661 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007283 |
spermatogenesis |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P27661 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P27661 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005694 |
chromosome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P27661 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005657 |
replication fork |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P27661 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P27661 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003684 |
damaged DNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P27661 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0001741 |
XY body |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P27661 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0001673 |
male germ cell nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P27661 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0000794 |
condensed nuclear chromosome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P27661 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P27661 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0000785 |
chromatin |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P27661 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000724 |
double-strand break repair via homologous recombination |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P27661 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0000786 |
nucleosome |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0046982 |
protein heterodimerization activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006303 |
double-strand break repair via nonhomologous end joining |
Reactome:R-HSA-5693571 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005654 |
nucleoplasm |
Reactome:R-HSA-69891 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
part_of |
GO:0005694 |
chromosome |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051321 |
meiotic cell cycle |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007049 |
cell cycle |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0000786 |
nucleosome |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006310 |
DNA recombination |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0016032 |
viral process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Gilmore, JM et al. (2016) WDR76 Co-Localizes with Heterochromatin Related Proteins and Rapidly Responds to DNA Damage. PLoS ONE 11 e0155492 PubMed GONUTS page
- ↑ Zhang, S et al. (2007) Werner syndrome helicase (WRN), nuclear DNA helicase II (NDH II) and histone gammaH2AX are localized to the centrosome. Cell Biol. Int. 31 1109-21 PubMed GONUTS page
- ↑ Richter, K et al. (2009) Speckled-like pattern in the germinal center (SLIP-GC), a nuclear GTPase expressed in activation-induced deaminase-expressing lymphomas and germinal center B cells. J. Biol. Chem. 284 30652-61 PubMed GONUTS page
- ↑ Tummala, H et al. (2014) ERCC6L2 mutations link a distinct bone-marrow-failure syndrome to DNA repair and mitochondrial function. Am. J. Hum. Genet. 94 246-56 PubMed GONUTS page
- ↑ Bonenfant, D et al. (2006) Characterization of histone H2A and H2B variants and their post-translational modifications by mass spectrometry. Mol. Cell Proteomics 5 541-52 PubMed GONUTS page
- ↑ Principe, S et al. (2013) In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. Proteomics 13 1667-71 PubMed GONUTS page
- ↑ de Mateo, S et al. (2011) Proteomic characterization of the human sperm nucleus. Proteomics 11 2714-26 PubMed GONUTS page
- ↑ Lopez, MF et al. (2012) Depletion of nuclear histone H2A variants is associated with chronic DNA damage signaling upon drug-evoked senescence of human somatic cells. Aging (Albany NY) 4 823-42 PubMed GONUTS page
- ↑ 9.0 9.1 Herbig, U et al. (2004) Telomere shortening triggers senescence of human cells through a pathway involving ATM, p53, and p21(CIP1), but not p16(INK4a). Mol. Cell 14 501-13 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 10.3 10.4 Cook, PJ et al. (2009) Tyrosine dephosphorylation of H2AX modulates apoptosis and survival decisions. Nature 458 591-6 PubMed GONUTS page
- ↑ 11.0 11.1 Mannironi, C et al. (1989) H2A.X. a histone isoprotein with a conserved C-terminal sequence, is encoded by a novel mRNA with both DNA replication type and polyA 3' processing signals. Nucleic Acids Res. 17 9113-26 PubMed GONUTS page
- ↑ 12.0 12.1 Medina, R et al. (2007) The HiNF-P/p220NPAT cell cycle signaling pathway controls nonhistone target genes. Cancer Res. 67 10334-42 PubMed GONUTS page
- ↑ 13.0 13.1 13.2 13.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Boehler, C et al. (2011) Poly(ADP-ribose) polymerase 3 (PARP3), a newcomer in cellular response to DNA damage and mitotic progression. Proc. Natl. Acad. Sci. U.S.A. 108 2783-8 PubMed GONUTS page
- ↑ Polci, R et al. (2004) NIMA-related protein kinase 1 is involved early in the ionizing radiation-induced DNA damage response. Cancer Res. 64 8800-3 PubMed GONUTS page
- ↑ Chadwick, BP & Willard, HF (2001) Histone H2A variants and the inactive X chromosome: identification of a second macroH2A variant. Hum. Mol. Genet. 10 1101-13 PubMed GONUTS page
c
- Catarrhini
- GO:0071480 ! cellular response to gamma radiation
- GO:0090398 ! cellular senescence
- GO:0007049 ! cell cycle
- GO:0005813 ! centrosome
- GO:0021987 ! cerebral cortex development
- Chordata
- GO:0000785 ! chromatin
- GO:0006325 ! chromatin organization
- GO:0005694 ! chromosome
- GO:0000781 ! chromosome, telomeric region
- GO:0000794 ! condensed nuclear chromosome
- Craniata
d
- GO:0003684 ! damaged DNA binding
- GO:0003677 ! DNA binding
- GO:0000077 ! DNA damage checkpoint signaling
- GO:0006974 ! DNA damage response
- GO:0006310 ! DNA recombination
- GO:0006281 ! DNA repair
- GO:0006303 ! double-strand break repair via nonhomologous end joining
- GO:0000724 ! double-strand break repair via homologous recombination
- GO:0006302 ! double-strand break repair
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