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HUMAN:DNM3A

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Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) DNMT3A
Protein Name(s) DNA (cytosine-5)-methyltransferase 3A

Dnmt3a DNA methyltransferase HsaIIIA DNA MTase HsaIIIA M.HsaIIIA

External Links
UniProt Q9Y6K1
EMBL AF067972
AF480163
AF331856
AC012074
CH471053
BC032392
BC043617
BC051864
CCDS CCDS1718.2
CCDS33157.1
CCDS46232.1
RefSeq NP_072046.2
NP_715640.2
NP_783328.1
NP_783329.1
XP_005264232.1
XP_005264233.1
XP_005264234.1
UniGene Hs.515840
PDB 2QRV
3A1A
3A1B
3LLR
3SVM
4U7P
4U7T
PDBsum 2QRV
3A1A
3A1B
3LLR
3SVM
4U7P
4U7T
ProteinModelPortal Q9Y6K1
SMR Q9Y6K1
BioGrid 108125
DIP DIP-38004N
IntAct Q9Y6K1
STRING 9606.ENSP00000264709
BindingDB Q9Y6K1
ChEMBL CHEMBL3137291
REBASE 4119
PhosphoSite Q9Y6K1
DMDM 166215081
MaxQB Q9Y6K1
PaxDb Q9Y6K1
PRIDE Q9Y6K1
DNASU 1788
Ensembl ENST00000264709
ENST00000321117
ENST00000380746
ENST00000402667
ENST00000406659
GeneID 1788
KEGG hsa:1788
UCSC uc002rgc.4
uc002rgf.3
CTD 1788
GeneCards GC02M025455
HGNC HGNC:2978
HPA CAB009469
HPA026588
MIM 602769
615879
neXtProt NX_Q9Y6K1
Orphanet 404443
PharmGKB PA27445
eggNOG NOG70699
GeneTree ENSGT00390000008341
HOGENOM HOG000230875
HOVERGEN HBG051381
InParanoid Q9Y6K1
KO K17398
OMA FVGGMCQ
OrthoDB EOG7MWGW6
PhylomeDB Q9Y6K1
TreeFam TF329039
BRENDA 2.1.1.37
Reactome REACT_200808
REACT_228108
REACT_267652
ChiTaRS DNMT3A
EvolutionaryTrace Q9Y6K1
GenomeRNAi 1788
NextBio 7279
PRO PR:Q9Y6K1
Proteomes UP000005640
Bgee Q9Y6K1
CleanEx HS_DNMT3A
ExpressionAtlas Q9Y6K1
Genevestigator Q9Y6K1
GO GO:0000775
GO:0005737
GO:0000791
GO:0005720
GO:0016363
GO:0005654
GO:0005634
GO:0003682
GO:0003886
GO:0051718
GO:0003677
GO:0042802
GO:0046872
GO:0045322
GO:0090116
GO:0071230
GO:0006306
GO:0043045
GO:0043046
GO:0010424
GO:0044027
GO:0006346
GO:0000122
GO:0006349
GO:0046498
GO:0046499
GO:0007283
Gene3D 3.40.50.150
InterPro IPR025766
IPR018117
IPR001525
IPR000313
IPR029063
Pfam PF00855
SMART SM00293
SUPFAM SSF53335
PROSITE PS51533
PS00094
PS50812
PS51679

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0042127

regulation of cell proliferation

PMID:21572997[1]

ECO:0000314

P

FIg. 2B shows that inhibition of DNMTs decreases the proliferation rate in a dose-dependent manner.

Fig. 2E shows that inhibition of DNMTs arrests most cells in the G1 phase.

complete
CACAO 10767

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:19786833[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

regulates_transcription_of:(ENSEMBL:ENSG00000110092)

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

PMID:19786833[2]

ECO:0000314

direct assay evidence used in manual assertion

F

has_direct_input:(ENSEMBL:ENSG00000110092)

Seeded From UniProt

complete

involved_in

GO:0006306

DNA methylation

PMID:19786833[2]

ECO:0000314

direct assay evidence used in manual assertion

P

  • has_direct_input:(ENSEMBL:ENSG00000110092)
  • occurs_at:(SO:0005836)

Seeded From UniProt

complete

enables

GO:0008134

transcription factor binding

PMID:19786833[2]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P01106

F

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

GO_REF:0000113

ECO:0005556

multiple sequence alignment evidence used in manual assertion

UniProtKB:P17679

F

Seeded From UniProt

complete

enables

GO:0003886

DNA (cytosine-5-)-methyltransferase activity

PMID:19786833[2]

ECO:0000314

direct assay evidence used in manual assertion

F

  • part_of:(GO:0000122)
  • regulates_transcription_of:(ENSEMBL:ENSG00000110092)

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:23042785[3]

ECO:0000305

curator inference used in manual assertion

GO:0000978,GO:0006306

P

regulates_transcription_of:(ENSEMBL:ENSG00000076242)|regulates_transcription_of:(ENSEMBL:ENSG00000112246)|regulates_transcription_of:(ENSEMBL:ENSG00000092969)

Seeded From UniProt

complete

involved_in

GO:0006306

DNA methylation

PMID:23042785[3]

ECO:0000314

direct assay evidence used in manual assertion

P

  • has_direct_input:(ENSEMBL:ENSG00000076242)
  • occurs_at:(SO:0001952)|has_direct_input(ENSEMBL:ENSG00000112246)
  • occurs_at:(SO:0001952)|has_direct_input(ENSEMBL:ENSG00000092969)
  • occurs_at:(SO:0001952)

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

PMID:23042785[3]

ECO:0000314

direct assay evidence used in manual assertion

F

has_direct_input:(ENSEMBL:ENSG00000076242)|has_direct_input:(ENSEMBL:ENSG00000112246)|has_direct_input:(ENSEMBL:ENSG00000092969)

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:25743254[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0016363

nuclear matrix

PMID:12138111[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0006306

DNA methylation

PMID:12138111[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:12138111[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:12138111[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0003886

DNA (cytosine-5-)-methyltransferase activity

PMID:12138111[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:12138111[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0000791

euchromatin

PMID:12138111[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:24656771[6]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q9Y6K1

F

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0090116

C-5 methylation of cytosine

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0003886

P

Seeded From UniProt

complete

involved_in

GO:0090116

C-5 methylation of cytosine

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0003886

P

Seeded From UniProt

complete

involved_in

GO:0090116

C-5 methylation of cytosine

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0003886

P

Seeded From UniProt

complete

involved_in

GO:0090116

C-5 methylation of cytosine

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0003886

P

Seeded From UniProt

complete

involved_in

GO:0071230

cellular response to amino acid stimulus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

P

Seeded From UniProt

complete

involved_in

GO:0043046

DNA methylation involved in gamete generation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

P

Seeded From UniProt

complete

involved_in

GO:0043045

DNA methylation involved in embryo development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

P

Seeded From UniProt

complete

involved_in

GO:0007283

spermatogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

P

Seeded From UniProt

complete

involved_in

GO:0006349

regulation of gene expression by genetic imprinting

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

P

Seeded From UniProt

complete

involved_in

GO:0006346

methylation-dependent chromatin silencing

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

P

Seeded From UniProt

complete

involved_in

GO:0006306

DNA methylation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

C

Seeded From UniProt

complete

part_of

GO:0005720

nuclear heterochromatin

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

C

Seeded From UniProt

complete

enables

GO:0003886

DNA (cytosine-5-)-methyltransferase activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

F

Seeded From UniProt

complete

enables

GO:0003682

chromatin binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

F

Seeded From UniProt

complete

part_of

GO:0001741

XY body

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

C

Seeded From UniProt

complete

part_of

GO:0000792

heterochromatin

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

C

Seeded From UniProt

complete

part_of

GO:0000775

chromosome, centromeric region

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

C

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88508
ensembl:ENSMUSP00000020991

P

Seeded From UniProt

complete

involved_in

GO:0097284

hepatocyte apoptotic process

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0071456

cellular response to hypoxia

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0071361

cellular response to ethanol

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0045471

response to ethanol

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0042493

response to drug

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0042220

response to cocaine

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0033189

response to vitamin A

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0032776

DNA methylation on cytosine

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0032355

response to estradiol

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0031667

response to nutrient levels

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0030182

neuron differentiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0010942

positive regulation of cell death

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0010288

response to lead ion

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0010212

response to ionizing radiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0009636

response to toxic substance

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0007568

aging

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

C

Seeded From UniProt

complete

enables

GO:0003682

chromatin binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

F

Seeded From UniProt

complete

involved_in

GO:0000278

mitotic cell cycle

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q1LZ53
ensembl:ENSRNOP00000046524

P

Seeded From UniProt

complete

involved_in

GO:0006306

DNA methylation

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR030487

P

Seeded From UniProt

complete

enables

GO:0008168

methyltransferase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001525

F

Seeded From UniProt

complete

enables

GO:0009008

DNA-methyltransferase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR030487

F

Seeded From UniProt

complete

involved_in

GO:0010468

regulation of gene expression

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR030487

P

Seeded From UniProt

complete

enables

GO:0003886

DNA (cytosine-5-)-methyltransferase activity

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:2.1.1.37

F

Seeded From UniProt

complete

enables

GO:0003714

transcription corepressor activity

PMID:19786833[2]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0006349

regulation of gene expression by genetic imprinting

PMID:12138111[5]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045814

negative regulation of gene expression, epigenetic

Reactome:R-HSA-212300

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0009008

DNA-methyltransferase activity

Reactome:R-HSA-212269

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

Reactome:R-HSA-5212679
Reactome:R-HSA-212269
Reactome:R-HSA-212222

ECO:0000304

author statement supported by traceable reference used in manual assertion



C

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

enables

GO:0016740

transferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0808

F

Seeded From UniProt

complete

involved_in

GO:0006325

chromatin organization

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0156

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

involved_in

GO:0032259

methylation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0489

P

Seeded From UniProt

complete

enables

GO:0008168

methyltransferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0489

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. So, AY et al. (2011) DNA methyltransferase controls stem cell aging by regulating BMI1 and EZH2 through microRNAs. PLoS ONE 6 e19503 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 2.5 Hervouet, E et al. (2009) Dnmt3/transcription factor interactions as crucial players in targeted DNA methylation. Epigenetics 4 487-99 PubMed GONUTS page
  3. 3.0 3.1 3.2 Szemes, M et al. (2013) Control of epigenetic states by WT1 via regulation of de novo DNA methyltransferase 3A. Hum. Mol. Genet. 22 74-83 PubMed GONUTS page
  4. Štalekar, M et al. (2015) Proteomic analyses reveal that loss of TDP-43 affects RNA processing and intracellular transport. Neuroscience 293 157-70 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 Chen, T et al. (2002) A novel Dnmt3a isoform produced from an alternative promoter localizes to euchromatin and its expression correlates with active de novo methylation. J. Biol. Chem. 277 38746-54 PubMed GONUTS page
  6. Russler-Germain, DA et al. (2014) The R882H DNMT3A mutation associated with AML dominantly inhibits wild-type DNMT3A by blocking its ability to form active tetramers. Cancer Cell 25 442-54 PubMed GONUTS page