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HUMAN:CO2A1
Contents
Species (Taxon ID) | Homo sapiens (Human). (9606) | |
Gene Name(s) | COL2A1 | |
Protein Name(s) | Collagen alpha-1(II) chain
Alpha-1 type II collagen Collagen alpha-1(II) chain Chondrocalcin | |
External Links | ||
UniProt | P02458 | |
EMBL | X16468 L10347 BT007205 AC004801 BC007252 BC116449 X16711 M25730 M32168 M25655 M25656 M64345 M60299 M25698 X58709 X57010 U15195 X13783 M25728 X02371 X02372 X02373 X02374 X02375 X02376 X02377 X02378 X16158 X16158 X16158 X16158 X16158 X16158 X16158 J00116 L00977 M63281 M27468 X06268 X00339 M12048 | |
CCDS | CCDS41778.1 CCDS8759.1 | |
PIR | A38513 | |
RefSeq | NP_001835.3 NP_149162.2 | |
UniGene | Hs.408182 | |
PDB | 1U5M 2FSE 2SEB | |
PDBsum | 1U5M 2FSE 2SEB | |
DisProt | DP00274 | |
ProteinModelPortal | P02458 | |
SMR | P02458 | |
BioGrid | 107677 | |
IntAct | P02458 | |
MINT | MINT-6796075 | |
ChEMBL | CHEMBL2364188 | |
DrugBank | DB00048 | |
PhosphoSite | P02458 | |
DMDM | 124056489 | |
MaxQB | P02458 | |
PaxDb | P02458 | |
PRIDE | P02458 | |
DNASU | 1280 | |
Ensembl | ENST00000337299 ENST00000380518 | |
GeneID | 1280 | |
KEGG | hsa:1280 | |
UCSC | uc001rqt.3 uc001rqu.3 uc001rqv.3 | |
CTD | 1280 | |
GeneCards | GC12M048366 | |
GeneReviews | COL2A1 | |
HGNC | HGNC:2200 | |
HPA | CAB002214 HPA045939 | |
MIM | 108300 120140 132450 150600 151210 156550 183900 184250 200610 271700 604864 608805 609162 609508 | |
neXtProt | NX_P02458 | |
Orphanet | 93296 209867 137678 85198 86820 93297 485 2380 93279 166011 1427 85166 93346 94068 93315 93316 1856 90653 | |
PharmGKB | PA26715 | |
eggNOG | NOG12793 | |
GeneTree | ENSGT00770000120467 | |
HOVERGEN | HBG004933 | |
InParanoid | P02458 | |
KO | K06236 | |
OMA | LQDGCTK | |
OrthoDB | EOG7TJ3HH | |
PhylomeDB | P02458 | |
TreeFam | TF344135 | |
Reactome | REACT_118779 REACT_121139 REACT_13552 REACT_150180 REACT_150401 REACT_163874 REACT_163906 REACT_16888 REACT_18312 | |
ChiTaRS | COL2A1 | |
EvolutionaryTrace | P02458 | |
GeneWiki | Collagen,_type_II,_alpha_1 | |
GenomeRNAi | 1280 | |
NextBio | 5171 | |
PMAP-CutDB | P02458 | |
PRO | PR:P02458 | |
Proteomes | UP000005640 | |
Bgee | P02458 | |
Genevestigator | P02458 | |
GO | GO:0005604 GO:0005585 GO:0005788 GO:0031012 GO:0005576 GO:0005615 GO:0030020 GO:0042802 GO:0046872 GO:0048407 GO:0007411 GO:0001502 GO:0051216 GO:0060351 GO:0071773 GO:0007417 GO:0002062 GO:0030574 GO:0030199 GO:0060272 GO:0001958 GO:0022617 GO:0030198 GO:0003007 GO:0042472 GO:0060174 GO:2001240 GO:0030903 GO:0071599 GO:0060021 GO:0006029 GO:0010468 GO:0007605 GO:0001501 GO:0001894 GO:0007601 | |
InterPro | IPR008160 IPR000885 IPR001007 | |
Pfam | PF01410 PF01391 PF00093 | |
ProDom | PD002078 | |
SMART | SM00038 SM00214 | |
PROSITE | PS51461 PS01208 PS50184 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
Contributes to |
GO:0005202 |
collagen |
ECO:0000314 |
F |
Load bearing replacement that mimics bone |
complete | ||||
enables |
GO:0030020 |
extracellular matrix structural constituent conferring tensile strength |
ECO:0007666 |
automatically integrated combinatorial computational and experimental evidence used in manual assertion |
F |
occurs_in:(CL:0002540)|occurs_in:(CL:0002570)|occurs_in:(CL:0002551) |
Seeded From UniProt |
complete | ||
part_of |
GO:0062023 |
collagen-containing extracellular matrix |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
part_of:(CL:0002540)|part_of:(CL:0002570)|part_of:(CL:0002551) |
Seeded From UniProt |
complete | ||
part_of |
GO:0062023 |
collagen-containing extracellular matrix |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
part_of:(UBERON:0002371) |
Seeded From UniProt |
complete | ||
enables |
GO:0030020 |
extracellular matrix structural constituent conferring tensile strength |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
F |
occurs_in:(UBERON:0002371) |
Seeded From UniProt |
complete | ||
enables |
GO:0030020 |
extracellular matrix structural constituent conferring tensile strength |
ECO:0007666 |
automatically integrated combinatorial computational and experimental evidence used in manual assertion |
F |
|
Seeded From UniProt |
complete | ||
part_of |
GO:0062023 |
collagen-containing extracellular matrix |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
part_of:(UBERON:0003688)|part_of:(UBERON:0001911) |
Seeded From UniProt |
complete | ||
enables |
GO:0030020 |
extracellular matrix structural constituent conferring tensile strength |
ECO:0007666 |
automatically integrated combinatorial computational and experimental evidence used in manual assertion |
F |
occurs_in:(UBERON:0003688)|occurs_in:(UBERON:0001911) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005615 |
extracellular space |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0042289 |
MHC class II protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005576 |
extracellular region |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
part_of:(UBERON:0007318) |
Seeded From UniProt |
complete | ||
part_of |
GO:0062023 |
collagen-containing extracellular matrix |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
part_of |
GO:0062023 |
collagen-containing extracellular matrix |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
part_of:(CL:0002322) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0060272 |
embryonic skeletal joint morphogenesis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000303 |
author statement without traceable support used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0030199 |
collagen fibril organization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0030020 |
extracellular matrix structural constituent conferring tensile strength |
ECO:0000305 |
curator inference used in manual assertion |
GO:0005585 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007605 |
sensory perception of sound |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007601 |
visual perception |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005585 |
collagen type II trimer |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0001501 |
skeletal system development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007601 |
visual perception |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0031012 |
extracellular matrix |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:88445 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0030903 |
notochord development |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:88452 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0030199 |
collagen fibril organization |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:88452 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0030198 |
extracellular matrix organization |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1095415 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005615 |
extracellular space |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:88452 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005585 |
collagen type II trimer |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:88452 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005581 |
collagen trimer |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:88452 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0005201 |
extracellular matrix structural constituent |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:104687 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0001501 |
skeletal system development |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:88458 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0048407 |
platelet-derived growth factor binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0043394 |
proteoglycan binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:2001240 |
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0097065 |
anterior head development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0071773 |
cellular response to BMP stimulus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0071599 |
otic vesicle development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0060351 |
cartilage development involved in endochondral bone morphogenesis |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0060348 |
bone development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0060174 |
limb bud formation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0060021 |
roof of mouth development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0051216 |
cartilage development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0048839 |
inner ear development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0048705 |
skeletal system morphogenesis |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0042802 |
identical protein binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0042472 |
inner ear morphogenesis |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0035108 |
limb morphogenesis |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0031012 |
extracellular matrix |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0030903 |
notochord development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0030199 |
collagen fibril organization |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0010468 |
regulation of gene expression |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007417 |
central nervous system development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006029 |
proteoglycan metabolic process |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005615 |
extracellular space |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005604 |
basement membrane |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005585 |
collagen type II trimer |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005581 |
collagen trimer |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0003007 |
heart morphogenesis |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0002062 |
chondrocyte differentiation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0001958 |
endochondral ossification |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0001894 |
tissue homeostasis |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0001503 |
ossification |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0001502 |
cartilage condensation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P28481 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0005201 |
extracellular matrix structural constituent |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051216 |
cartilage development |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0050776 |
regulation of immune response |
Reactome:R-HSA-198933 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0030198 |
extracellular matrix organization |
Reactome:R-HSA-1474244 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005788 |
endoplasmic reticulum lumen |
Reactome:R-HSA-8944266 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
part_of |
GO:0005576 |
extracellular region |
Reactome:R-HSA-5696356 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
part_of |
GO:0005581 |
collagen trimer |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005576 |
extracellular region |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Banglmaier, RF et al. (2015) Induction and quantification of collagen fiber alignment in a three-dimensional hydroxyapatite-collagen composite scaffold. Acta Biomater 17 26-35 PubMed GONUTS page
- ↑ 2.0 2.1 Ragelle, H et al. (2017) Comprehensive proteomic characterization of stem cell-derived extracellular matrices. Biomaterials 128 147-159 PubMed GONUTS page
- ↑ 3.0 3.1 Glavey, SV et al. (2017) Proteomic characterization of human multiple myeloma bone marrow extracellular matrix. Leukemia 31 2426-2434 PubMed GONUTS page
- ↑ 4.0 4.1 Barallobre-Barreiro, J et al. (2016) Glycoproteomics Reveals Decorin Peptides With Anti-Myostatin Activity in Human Atrial Fibrillation. Circulation 134 817-32 PubMed GONUTS page
- ↑ 5.0 5.1 Naba, A et al. (2017) Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics. J. Proteome Res. 16 3083-3091 PubMed GONUTS page
- ↑ Cai, L et al. (2010) Nonmuscle myosin-dependent synthesis of type I collagen. J. Mol. Biol. 401 564-78 PubMed GONUTS page
- ↑ Dessen, A et al. (1997) X-ray crystal structure of HLA-DR4 (DRA*0101, DRB1*0401) complexed with a peptide from human collagen II. Immunity 7 473-81 PubMed GONUTS page
- ↑ Barallobre-Barreiro, J et al. (2016) Extracellular matrix remodelling in response to venous hypertension: proteomics of human varicose veins. Cardiovasc. Res. 110 419-30 PubMed GONUTS page
- ↑ Soteriou, D et al. (2013) Comparative proteomic analysis of supportive and unsupportive extracellular matrix substrates for human embryonic stem cell maintenance. J. Biol. Chem. 288 18716-31 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 Richards, AJ et al. (2006) High efficiency of mutation detection in type 1 stickler syndrome using a two-stage approach: vitreoretinal assessment coupled with exon sequencing for screening COL2A1. Hum. Mutat. 27 696-704 PubMed GONUTS page
- ↑ Su, MW et al. (1989) Nucleotide sequence of the full length cDNA encoding for human type II procollagen. Nucleic Acids Res. 17 9473 PubMed GONUTS page
- ↑ 12.0 12.1 Bogaert, R et al. (1992) An amino acid substitution (Gly853-->Glu) in the collagen alpha 1(II) chain produces hypochondrogenesis. J. Biol. Chem. 267 22522-6 PubMed GONUTS page
- ↑ 13.0 13.1 Diab, M et al. (1996) Collagen type IX from human cartilage: a structural profile of intermolecular cross-linking sites. Biochem. J. 314 ( Pt 1) 327-32 PubMed GONUTS page
- ↑ Annunen, S et al. (1999) Splicing mutations of 54-bp exons in the COL11A1 gene cause Marshall syndrome, but other mutations cause overlapping Marshall/Stickler phenotypes. Am. J. Hum. Genet. 65 974-83 PubMed GONUTS page
- ↑ 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Somasundaram, R & Schuppan, D (1996) Type I, II, III, IV, V, and VI collagens serve as extracellular ligands for the isoforms of platelet-derived growth factor (AA, BB, and AB). J. Biol. Chem. 271 26884-91 PubMed GONUTS page
- ↑ Flowers, SA et al. (2017) Lubricin binds cartilage proteins, cartilage oligomeric matrix protein, fibronectin and collagen II at the cartilage surface. Sci Rep 7 13149 PubMed GONUTS page
- ↑ Tiller, GE et al. (1995) Dominant mutations in the type II collagen gene, COL2A1, produce spondyloepimetaphyseal dysplasia, Strudwick type. Nat. Genet. 11 87-9 PubMed GONUTS page
c
- GO:0001502 ! cartilage condensation
- GO:0060351 ! cartilage development involved in endochondral bone morphogenesis
- GO:0051216 ! cartilage development
- Catarrhini
- GO:0071773 ! cellular response to BMP stimulus
- GO:0007417 ! central nervous system development
- GO:0002062 ! chondrocyte differentiation
- Chordata
- GO:0062023 ! collagen-containing extracellular matrix
- GO:0030199 ! collagen fibril organization
- GO:0005581 ! collagen trimer
- GO:0005585 ! collagen type II trimer
- Craniata
- GO:0005737 ! cytoplasm
e
- GO:0060272 ! embryonic skeletal joint morphogenesis
- GO:0001958 ! endochondral ossification
- GO:0005788 ! endoplasmic reticulum lumen
- Euarchontoglires
- Eukaryota
- Euteleostomi
- Eutheria
- GO:0005201 ! extracellular matrix structural constituent
- GO:0030198 ! extracellular matrix organization
- GO:0031012 ! extracellular matrix
- GO:0030020 ! extracellular matrix structural constituent conferring tensile strength
- GO:0005576 ! extracellular region
- GO:0005615 ! extracellular space
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