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HUMAN:CO2A1

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Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) COL2A1
Protein Name(s) Collagen alpha-1(II) chain

Alpha-1 type II collagen Collagen alpha-1(II) chain Chondrocalcin

External Links
UniProt P02458
EMBL X16468
L10347
BT007205
AC004801
BC007252
BC116449
X16711
M25730
M32168
M25655
M25656
M64345
M60299
M25698
X58709
X57010
U15195
X13783
M25728
X02371
X02372
X02373
X02374
X02375
X02376
X02377
X02378
X16158
X16158
X16158
X16158
X16158
X16158
X16158
J00116
L00977
M63281
M27468
X06268
X00339
M12048
CCDS CCDS41778.1
CCDS8759.1
PIR A38513
RefSeq NP_001835.3
NP_149162.2
UniGene Hs.408182
PDB 1U5M
2FSE
2SEB
PDBsum 1U5M
2FSE
2SEB
DisProt DP00274
ProteinModelPortal P02458
SMR P02458
BioGrid 107677
IntAct P02458
MINT MINT-6796075
ChEMBL CHEMBL2364188
DrugBank DB00048
PhosphoSite P02458
DMDM 124056489
MaxQB P02458
PaxDb P02458
PRIDE P02458
DNASU 1280
Ensembl ENST00000337299
ENST00000380518
GeneID 1280
KEGG hsa:1280
UCSC uc001rqt.3
uc001rqu.3
uc001rqv.3
CTD 1280
GeneCards GC12M048366
GeneReviews COL2A1
HGNC HGNC:2200
HPA CAB002214
HPA045939
MIM 108300
120140
132450
150600
151210
156550
183900
184250
200610
271700
604864
608805
609162
609508
neXtProt NX_P02458
Orphanet 93296
209867
137678
85198
86820
93297
485
2380
93279
166011
1427
85166
93346
94068
93315
93316
1856
90653
PharmGKB PA26715
eggNOG NOG12793
GeneTree ENSGT00770000120467
HOVERGEN HBG004933
InParanoid P02458
KO K06236
OMA LQDGCTK
OrthoDB EOG7TJ3HH
PhylomeDB P02458
TreeFam TF344135
Reactome REACT_118779
REACT_121139
REACT_13552
REACT_150180
REACT_150401
REACT_163874
REACT_163906
REACT_16888
REACT_18312
ChiTaRS COL2A1
EvolutionaryTrace P02458
GeneWiki Collagen,_type_II,_alpha_1
GenomeRNAi 1280
NextBio 5171
PMAP-CutDB P02458
PRO PR:P02458
Proteomes UP000005640
Bgee P02458
Genevestigator P02458
GO GO:0005604
GO:0005585
GO:0005788
GO:0031012
GO:0005576
GO:0005615
GO:0030020
GO:0042802
GO:0046872
GO:0048407
GO:0007411
GO:0001502
GO:0051216
GO:0060351
GO:0071773
GO:0007417
GO:0002062
GO:0030574
GO:0030199
GO:0060272
GO:0001958
GO:0022617
GO:0030198
GO:0003007
GO:0042472
GO:0060174
GO:2001240
GO:0030903
GO:0071599
GO:0060021
GO:0006029
GO:0010468
GO:0007605
GO:0001501
GO:0001894
GO:0007601
InterPro IPR008160
IPR000885
IPR001007
Pfam PF01410
PF01391
PF00093
ProDom PD002078
SMART SM00038
SM00214
PROSITE PS51461
PS01208
PS50184

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

Contributes to

GO:0005202

collagen

PMID:25653215[1]

ECO:0000314

F

Load bearing replacement that mimics bone

complete
CACAO 10559

enables

GO:0030020

extracellular matrix structural constituent conferring tensile strength

PMID:28327460[2]

ECO:0007666

automatically integrated combinatorial computational and experimental evidence used in manual assertion

F

occurs_in:(CL:0002540)|occurs_in:(CL:0002570)|occurs_in:(CL:0002551)

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

PMID:28327460[2]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(CL:0002540)|part_of:(CL:0002570)|part_of:(CL:0002551)

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

PMID:28344315[3]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(UBERON:0002371)

Seeded From UniProt

complete

enables

GO:0030020

extracellular matrix structural constituent conferring tensile strength

PMID:28344315[3]

ECO:0007005

high throughput direct assay evidence used in manual assertion

F

occurs_in:(UBERON:0002371)

Seeded From UniProt

complete

enables

GO:0030020

extracellular matrix structural constituent conferring tensile strength

PMID:27559042[4]

ECO:0007666

automatically integrated combinatorial computational and experimental evidence used in manual assertion

F

  • occurs_in:(UBERON:0006618)
  • occurs_in:(UBERON:0002302)

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

PMID:28675934[5]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(UBERON:0003688)|part_of:(UBERON:0001911)

Seeded From UniProt

complete

enables

GO:0030020

extracellular matrix structural constituent conferring tensile strength

PMID:28675934[5]

ECO:0007666

automatically integrated combinatorial computational and experimental evidence used in manual assertion

F

occurs_in:(UBERON:0003688)|occurs_in:(UBERON:0001911)

Seeded From UniProt

complete

part_of

GO:0005615

extracellular space

PMID:20603131[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0042289

MHC class II protein binding

PMID:9354468[7]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P01903,UniProtKB:P13760

F

Seeded From UniProt

complete

part_of

GO:0005576

extracellular region

PMID:27068509[8]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(UBERON:0007318)

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

PMID:27559042[4]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

  • part_of:(UBERON:0006618)
  • part_of:(UBERON:0002302)

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

PMID:23658023[9]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(CL:0002322)

Seeded From UniProt

complete

involved_in

GO:0060272

embryonic skeletal joint morphogenesis

PMID:16752401[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:2587267[11]

ECO:0000303

author statement without traceable support used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0030199

collagen fibril organization

PMID:1429602[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0030020

extracellular matrix structural constituent conferring tensile strength

PMID:8660302[13]

ECO:0000305

curator inference used in manual assertion

GO:0005585

F

Seeded From UniProt

complete

involved_in

GO:0007605

sensory perception of sound

PMID:16752401[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007601

visual perception

PMID:16752401[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005585

collagen type II trimer

PMID:8660302[13]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0001501

skeletal system development

PMID:1429602[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007601

visual perception

PMID:10486316[14]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0031012

extracellular matrix

PMID:21873635[15]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:88445
MGI:MGI:88446
MGI:MGI:88452
MGI:MGI:88453
MGI:MGI:88457
MGI:MGI:88467
PANTHER:PTN002513067

C

Seeded From UniProt

complete

involved_in

GO:0030903

notochord development

PMID:21873635[15]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:88452
PANTHER:PTN002771202

P

Seeded From UniProt

complete

involved_in

GO:0030199

collagen fibril organization

PMID:21873635[15]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:88452
MGI:MGI:88458
PANTHER:PTN002771202
UniProtKB:P02458
UniProtKB:P05997

P

Seeded From UniProt

complete

involved_in

GO:0030198

extracellular matrix organization

PMID:21873635[15]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1095415
MGI:MGI:2152695
MGI:MGI:2672118
MGI:MGI:88451
PANTHER:PTN002513067
WB:WBGene00001263
ZFIN:ZDB-GENE-030131-2281

P

Seeded From UniProt

complete

part_of

GO:0005615

extracellular space

PMID:21873635[15]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:88452
MGI:MGI:88468
PANTHER:PTN002513067
RGD:61817
RGD:70936
RGD:727898
UniProtKB:P02452
UniProtKB:P02458
UniProtKB:P02461
UniProtKB:P08123
UniProtKB:Q9BXS0

C

Seeded From UniProt

complete

part_of

GO:0005585

collagen type II trimer

PMID:21873635[15]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:88452
PANTHER:PTN001166557
UniProtKB:P02458

C

Seeded From UniProt

complete

part_of

GO:0005581

collagen trimer

PMID:21873635[15]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:88452
MGI:MGI:88458
PANTHER:PTN002771202

C

Seeded From UniProt

complete

enables

GO:0005201

extracellular matrix structural constituent

PMID:21873635[15]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:104687
MGI:MGI:2672118
MGI:MGI:88457
MGI:MGI:88467
PANTHER:PTN002513067
UniProtKB:P02461
UniProtKB:P02462
UniProtKB:P53420

F

Seeded From UniProt

complete

involved_in

GO:0001501

skeletal system development

PMID:21873635[15]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:88458
PANTHER:PTN002771202
UniProtKB:P02458

P

Seeded From UniProt

complete

enables

GO:0048407

platelet-derived growth factor binding

PMID:8900172[16]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0043394

proteoglycan binding

PMID:29030641[17]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:2001240

negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0097065

anterior head development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0071773

cellular response to BMP stimulus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0071599

otic vesicle development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0060351

cartilage development involved in endochondral bone morphogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0060348

bone development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0060174

limb bud formation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0060021

roof of mouth development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0051216

cartilage development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0048839

inner ear development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0048705

skeletal system morphogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

F

Seeded From UniProt

complete

involved_in

GO:0042472

inner ear morphogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0035108

limb morphogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

part_of

GO:0031012

extracellular matrix

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

C

Seeded From UniProt

complete

involved_in

GO:0030903

notochord development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0030199

collagen fibril organization

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0010468

regulation of gene expression

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0007417

central nervous system development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0006029

proteoglycan metabolic process

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

C

Seeded From UniProt

complete

part_of

GO:0005615

extracellular space

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

C

Seeded From UniProt

complete

part_of

GO:0005604

basement membrane

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

C

Seeded From UniProt

complete

part_of

GO:0005585

collagen type II trimer

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

C

Seeded From UniProt

complete

part_of

GO:0005581

collagen trimer

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

C

Seeded From UniProt

complete

involved_in

GO:0003007

heart morphogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0002062

chondrocyte differentiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0001958

endochondral ossification

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0001894

tissue homeostasis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0001503

ossification

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

involved_in

GO:0001502

cartilage condensation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P28481
ensembl:ENSMUSP00000023123

P

Seeded From UniProt

complete

enables

GO:0005201

extracellular matrix structural constituent

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000885

F

Seeded From UniProt

complete

involved_in

GO:0051216

cartilage development

PMID:7550321[18]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0050776

regulation of immune response

Reactome:R-HSA-198933

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0030198

extracellular matrix organization

Reactome:R-HSA-1474244

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005788

endoplasmic reticulum lumen

Reactome:R-HSA-8944266
Reactome:R-HSA-8944263
Reactome:R-HSA-2089971
Reactome:R-HSA-2022073

ECO:0000304

author statement supported by traceable reference used in manual assertion




C

Seeded From UniProt

complete

part_of

GO:0005576

extracellular region

Reactome:R-HSA-5696356
Reactome:R-HSA-382054
Reactome:R-HSA-375151
Reactome:R-HSA-2473594
Reactome:R-HSA-2465890
Reactome:R-HSA-2424252
Reactome:R-HSA-2396370
Reactome:R-HSA-2327909
Reactome:R-HSA-2327738
Reactome:R-HSA-2327733
Reactome:R-HSA-2299620
Reactome:R-HSA-2213210
Reactome:R-HSA-2213208
Reactome:R-HSA-2213205
Reactome:R-HSA-2213201
Reactome:R-HSA-216043
Reactome:R-HSA-2089971
Reactome:R-HSA-2002440
Reactome:R-HSA-2002428
Reactome:R-HSA-1474266
Reactome:R-HSA-1474197
Reactome:R-HSA-1454757

ECO:0000304

author statement supported by traceable reference used in manual assertion






















C

Seeded From UniProt

complete

part_of

GO:0005581

collagen trimer

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0176

C

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

part_of

GO:0005576

extracellular region

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0964

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Banglmaier, RF et al. (2015) Induction and quantification of collagen fiber alignment in a three-dimensional hydroxyapatite-collagen composite scaffold. Acta Biomater 17 26-35 PubMed GONUTS page
  2. 2.0 2.1 Ragelle, H et al. (2017) Comprehensive proteomic characterization of stem cell-derived extracellular matrices. Biomaterials 128 147-159 PubMed GONUTS page
  3. 3.0 3.1 Glavey, SV et al. (2017) Proteomic characterization of human multiple myeloma bone marrow extracellular matrix. Leukemia 31 2426-2434 PubMed GONUTS page
  4. 4.0 4.1 Barallobre-Barreiro, J et al. (2016) Glycoproteomics Reveals Decorin Peptides With Anti-Myostatin Activity in Human Atrial Fibrillation. Circulation 134 817-32 PubMed GONUTS page
  5. 5.0 5.1 Naba, A et al. (2017) Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics. J. Proteome Res. 16 3083-3091 PubMed GONUTS page
  6. Cai, L et al. (2010) Nonmuscle myosin-dependent synthesis of type I collagen. J. Mol. Biol. 401 564-78 PubMed GONUTS page
  7. Dessen, A et al. (1997) X-ray crystal structure of HLA-DR4 (DRA*0101, DRB1*0401) complexed with a peptide from human collagen II. Immunity 7 473-81 PubMed GONUTS page
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