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HELPY:FLID
Contents
Species (Taxon ID) | Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacterpylori). (85962) | |
Gene Name(s) | fliD | |
Protein Name(s) | Flagellar hook-associated protein 2
HAP2 Filament cap protein Flagellar cap protein | |
External Links | ||
UniProt | P96786 | |
EMBL | U82981 AE000511 | |
PIR | H64613 | |
RefSeq | NP_207545.1 YP_006934668.1 | |
DIP | DIP-3401N | |
IntAct | P96786 | |
MINT | MINT-176105 | |
STRING | 85962.HP0752 | |
EnsemblBacteria | AAD07800 | |
GeneID | 13869937 900004 | |
KEGG | heo:C694_03870 hpy:HP0752 | |
PATRIC | 20592793 | |
eggNOG | COG1345 | |
KO | K02407 | |
OMA | FAAYDSQ | |
OrthoDB | EOG6GN6X6 | |
Proteomes | UP000000429 | |
GO | GO:0009288 GO:0009424 GO:0005576 GO:0071978 GO:0007155 | |
InterPro | IPR010809 IPR003481 | |
Pfam | PF07195 PF02465 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0071978 |
bacterial-type flagellar swarming motility |
ECO:0000315 |
P |
Figure 5: Motility testing of H. pylori wild-type and isogenic fliD mutant strains revealed that the wild-type strain formed colonies with the large diffuse spreading halo typical of motile bacteria, while the fliD mutant strain showed no apparent motility (produced small and and sharply delineated colonies). |
complete | |||||
GO:0009288 |
bacterial-type flagellum |
ECO:0000315 |
C |
Figure 3: In wild-type cells, full length sheathed flagella are observed. Within the wild-type flagellar sheath, filaments are elongated to the tips of the flagella and terminal bulbs are observed. In the fliD mutant, truncated flagella are observed and terminal bulbs are not apparent. Filament elongation is not observed in the fliD mutant. |
complete | |||||
GO:0007155 |
cell adhesion |
ECO:0000315 |
P |
Table 2: No H. pylori cells could be recovered from the gastric tissue of the mice inoculated orally with the fliD mutant strain. The researchers recovered 2.23 x 10^5 cells per gram of gastric tissue from the mice inoculated orally with wild-type H. pylori. |
complete | |||||
involved_in |
GO:0071978 |
bacterial-type flagellum-dependent swarming motility |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0009288 |
bacterial-type flagellum |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0071973 |
bacterial-type flagellum-dependent cell motility |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10841 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0009421 |
bacterial-type flagellum filament cap |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000767631 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007155 |
cell adhesion |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0009288 |
bacterial-type flagellum |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0009421 |
bacterial-type flagellum filament cap |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0009424 |
bacterial-type flagellum hook |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0071973 |
bacterial-type flagellum-dependent cell motility |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0009288 |
bacterial-type flagellum |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005576 |
extracellular region |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 1.4 Kim, JS et al. (1999) Molecular cloning and characterization of the Helicobacter pylori fliD gene, an essential factor in flagellar structure and motility. J. Bacteriol. 181 6969-76 PubMed GONUTS page
- ↑ 2.0 2.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page