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HELPY:FLID

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Species (Taxon ID) Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacterpylori). (85962)
Gene Name(s) fliD
Protein Name(s) Flagellar hook-associated protein 2

HAP2 Filament cap protein Flagellar cap protein

External Links
UniProt P96786
EMBL U82981
AE000511
PIR H64613
RefSeq NP_207545.1
YP_006934668.1
DIP DIP-3401N
IntAct P96786
MINT MINT-176105
STRING 85962.HP0752
EnsemblBacteria AAD07800
GeneID 13869937
900004
KEGG heo:C694_03870
hpy:HP0752
PATRIC 20592793
eggNOG COG1345
KO K02407
OMA FAAYDSQ
OrthoDB EOG6GN6X6
Proteomes UP000000429
GO GO:0009288
GO:0009424
GO:0005576
GO:0071978
GO:0007155
InterPro IPR010809
IPR003481
Pfam PF07195
PF02465

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0071978

bacterial-type flagellar swarming motility

PMID:10559162[1]

ECO:0000315

P

Figure 5: Motility testing of H. pylori wild-type and isogenic fliD mutant strains revealed that the wild-type strain formed colonies with the large diffuse spreading halo typical of motile bacteria, while the fliD mutant strain showed no apparent motility (produced small and and sharply delineated colonies).

complete
CACAO 6249

GO:0009288

bacterial-type flagellum

PMID:10559162[1]

ECO:0000315

C

Figure 3: In wild-type cells, full length sheathed flagella are observed. Within the wild-type flagellar sheath, filaments are elongated to the tips of the flagella and terminal bulbs are observed. In the fliD mutant, truncated flagella are observed and terminal bulbs are not apparent. Filament elongation is not observed in the fliD mutant.

complete
CACAO 6252

GO:0007155

cell adhesion

PMID:10559162[1]

ECO:0000315

P

Table 2: No H. pylori cells could be recovered from the gastric tissue of the mice inoculated orally with the fliD mutant strain. The researchers recovered 2.23 x 10^5 cells per gram of gastric tissue from the mice inoculated orally with wild-type H. pylori.

complete
CACAO 6256

involved_in

GO:0071978

bacterial-type flagellum-dependent swarming motility

PMID:10559162[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0009288

bacterial-type flagellum

PMID:10559162[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0071973

bacterial-type flagellum-dependent cell motility

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG10841
PANTHER:PTN000767631

P

Seeded From UniProt

complete

part_of

GO:0009421

bacterial-type flagellum filament cap

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000767631
UniProtKB:Q9K3C5

C

Seeded From UniProt

complete

involved_in

GO:0007155

cell adhesion

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR010809

P

Seeded From UniProt

complete

part_of

GO:0009288

bacterial-type flagellum

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR010809

C

Seeded From UniProt

complete

part_of

GO:0009421

bacterial-type flagellum filament cap

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR040026

C

Seeded From UniProt

complete

part_of

GO:0009424

bacterial-type flagellum hook

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR003481

C

Seeded From UniProt

complete

involved_in

GO:0071973

bacterial-type flagellum-dependent cell motility

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR040026

P

Seeded From UniProt

complete

part_of

GO:0009288

bacterial-type flagellum

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0975
UniProtKB-SubCell:SL-0307

C

Seeded From UniProt

complete

part_of

GO:0005576

extracellular region

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0964
UniProtKB-SubCell:SL-0243

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 1.4 Kim, JS et al. (1999) Molecular cloning and characterization of the Helicobacter pylori fliD gene, an essential factor in flagellar structure and motility. J. Bacteriol. 181 6969-76 PubMed GONUTS page
  2. 2.0 2.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page