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ECOLI:YCDT
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | ycdT | |
| Protein Name(s) | Probable diguanylate cyclase YcdT
DGC | |
| External Links | ||
| UniProt | P75908 | |
| EMBL | U00096 AP009048 | |
| PIR | G64844 | |
| RefSeq | NP_415544.1 YP_489296.1 | |
| ProteinModelPortal | P75908 | |
| SMR | P75908 | |
| STRING | 511145.b1025 | |
| PRIDE | P75908 | |
| EnsemblBacteria | AAC74110 BAA35810 | |
| GeneID | 12934233 945593 | |
| KEGG | ecj:Y75_p0997 eco:b1025 | |
| PATRIC | 32117283 | |
| EchoBASE | EB3626 | |
| EcoGene | EG13866 | |
| eggNOG | COG2199 | |
| HOGENOM | HOG000118907 | |
| InParanoid | P75908 | |
| OMA | WIFILTT | |
| OrthoDB | EOG6G4VQG | |
| PhylomeDB | P75908 | |
| BioCyc | EcoCyc:G6532-MONOMER ECOL316407:JW5143-MONOMER MetaCyc:G6532-MONOMER | |
| UniPathway | UPA00599 | |
| PRO | PR:P75908 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P75908 | |
| GO | GO:0016021 GO:0005886 GO:0052621 GO:0005525 GO:0046872 GO:0008152 GO:0051271 | |
| InterPro | IPR000160 IPR029787 | |
| Pfam | PF00990 | |
| SMART | SM00267 | |
| SUPFAM | SSF55073 | |
| TIGRFAMs | TIGR00254 | |
| PROSITE | PS50887 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
involved_in |
GO:0090609 |
single-species submerged biofilm formation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0052621 |
diguanylate cyclase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0052621 |
diguanylate cyclase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0051271 |
negative regulation of cellular component movement |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0052621 |
diguanylate cyclase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-1003 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016740 |
transferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005525 |
GTP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Steiner, S et al. (2013) Allosteric activation of exopolysaccharide synthesis through cyclic di-GMP-stimulated protein-protein interaction. EMBO J. 32 354-68 PubMed GONUTS page
- ↑ Tagliabue, L et al. (2010) The diguanylate cyclase YddV controls production of the exopolysaccharide poly-N-acetylglucosamine (PNAG) through regulation of the PNAG biosynthetic pgaABCD operon. Microbiology (Reading, Engl.) 156 2901-11 PubMed GONUTS page
- ↑ 3.0 3.1 Jonas, K et al. (2008) The RNA binding protein CsrA controls cyclic di-GMP metabolism by directly regulating the expression of GGDEF proteins. Mol. Microbiol. 70 236-57 PubMed GONUTS page
- ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed GONUTS page
- ↑ Rapp, M et al. (2004) Experimentally based topology models for E. coli inner membrane proteins. Protein Sci. 13 937-45 PubMed GONUTS page
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