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ECOLI:YBJN
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | ybjN | |
| Protein Name(s) | Uncharacterized protein YbjN | |
| External Links | ||
| UniProt | P0AAY6 | |
| EMBL | U00096 AP009048 | |
| PIR | E64823 | |
| RefSeq | NP_415374.1 YP_489126.1 | |
| ProteinModelPortal | P0AAY6 | |
| IntAct | P0AAY6 | |
| STRING | 511145.b0853 | |
| EnsemblBacteria | AAC73940 BAA35564 | |
| GeneID | 12930999 945482 | |
| KEGG | ecj:Y75_p0826 eco:b0853 | |
| PATRIC | 32116911 | |
| EchoBASE | EB3447 | |
| EcoGene | EG13683 | |
| eggNOG | NOG05565 | |
| HOGENOM | HOG000276367 | |
| InParanoid | P0AAY6 | |
| OMA | YFECDSC | |
| OrthoDB | EOG60655C | |
| BioCyc | EcoCyc:G6447-MONOMER ECOL316407:JW0837-MONOMER | |
| PRO | PR:P0AAY6 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P0AAY6 | |
| GO | GO:1902201 GO:0030308 GO:1900232 GO:0009297 GO:1902208 | |
| InterPro | IPR019660 | |
| Pfam | PF10722 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:1902209 |
negative regulation of bacterial-type flagellum assembly |
ECO:0000315 |
P |
Figure 4C over-expression of ybjN negatively regulates flagellar gene expression. |
complete | |||||
| GO:1900232 |
negative regulation of single-species biofilm formation on inanimate substrate |
ECO:0000315 |
P |
Figure 6 shows YbjN is a negative regulator of biofilm formation. |
complete | |||||
| GO:0009297 |
pilus assembly |
ECO:0000315 |
P |
As shown in figure 3C, fimbriae are either malformed or not formed at all in cells with ybjN expression, whereas wild type cells produced substantial fimbriae. |
complete | |||||
|
involved_in |
GO:1902209 |
negative regulation of bacterial-type flagellum assembly |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:1902208 |
regulation of bacterial-type flagellum assembly |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
| GO:0030308 |
negative regulation of cell growth |
ECO:0000315 |
P |
Figure 2 shows over-expression of ybjN leads to growth inhibition |
complete | |||||
|
involved_in |
GO:1900232 |
negative regulation of single-species biofilm formation on inanimate substrate |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0030308 |
negative regulation of cell growth |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009297 |
pilus assembly |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:1902201 |
negative regulation of bacterial-type flagellum-dependent cell motility |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0010212 |
response to ionizing radiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Wang, D et al. (2011) The orphan gene ybjN conveys pleiotropic effects on multicellular behavior and survival of Escherichia coli. PLoS ONE 6 e25293 PubMed GONUTS page
- ↑ Byrne, RT et al. (2014) Escherichia coli genes and pathways involved in surviving extreme exposure to ionizing radiation. J. Bacteriol. 196 3534-45 PubMed GONUTS page
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