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ECOLI:SECD
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | secD | |
| Protein Name(s) | Protein translocase subunit SecD | |
| External Links | ||
| UniProt | P0AG90 | |
| EMBL | X56175 U82664 U00096 AP009048 S68715 | |
| PIR | H64769 | |
| RefSeq | NP_414942.1 YP_488700.1 | |
| ProteinModelPortal | P0AG90 | |
| SMR | P0AG90 | |
| DIP | DIP-35837N | |
| IntAct | P0AG90 | |
| MINT | MINT-1309074 | |
| STRING | 511145.b0408 | |
| TCDB | 2.A.6.4.1 | |
| PaxDb | P0AG90 | |
| PRIDE | P0AG90 | |
| EnsemblBacteria | AAC73511 BAE76188 | |
| GeneID | 12934102 949133 | |
| KEGG | ecj:Y75_p0396 eco:b0408 | |
| PATRIC | 32115965 | |
| EchoBASE | EB0931 | |
| EcoGene | EG10938 | |
| eggNOG | COG0342 | |
| HOGENOM | HOG000018637 | |
| InParanoid | P0AG90 | |
| KO | K03072 | |
| OMA | AAPMEII | |
| OrthoDB | EOG6N0HJT | |
| PhylomeDB | P0AG90 | |
| BioCyc | EcoCyc:SECD ECOL316407:JW0398-MONOMER | |
| PRO | PR:P0AG90 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P0AG90 | |
| GO | GO:0016021 GO:0005622 GO:0005886 GO:0015450 GO:0065002 GO:0006605 GO:0015031 GO:0043952 | |
| HAMAP | MF_01463_B | |
| InterPro | IPR005791 IPR027398 IPR022813 IPR022645 IPR022646 | |
| Pfam | PF07549 PF13721 PF02355 | |
| TIGRFAMs | TIGR00916 TIGR01129 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
involved_in |
GO:0015031 |
protein transport |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10938 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005887 |
integral component of plasma membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000763987 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0015031 |
protein transport |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006886 |
intracellular protein transport |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0015450 |
P-P-bond-hydrolysis-driven protein transmembrane transporter activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006605 |
protein targeting |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000054575 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000054575 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0065002 |
intracellular protein transmembrane transport |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000054575 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0043952 |
protein transport by the Sec complex |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000054575 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0015031 |
protein transport |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-1003 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Gardel, C et al. (1987) secD, a new gene involved in protein export in Escherichia coli. J. Bacteriol. 169 1286-90 PubMed GONUTS page
- ↑ Zhang, N et al. (2007) Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Proteomics 7 484-93 PubMed GONUTS page
- ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed GONUTS page
