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ECOLI:RUVB

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Species (Taxon ID) Escherichia coli (strain K12). (83333)
Gene Name(s) ruvB (ECO:0000255 with HAMAP-Rule:MF_00016)
Protein Name(s) Holliday junction ATP-dependent DNA helicase RuvB (ECO:0000255 with HAMAP-Rule:MF_00016)
External Links
UniProt P0A812
EMBL X07091
M21298
U00096
AP009048
PIR B28533
RefSeq NP_416374.1
YP_490122.1
ProteinModelPortal P0A812
SMR P0A812
DIP DIP-47870N
IntAct P0A812
MINT MINT-1266054
STRING 511145.b1860
PaxDb P0A812
EnsemblBacteria AAC74930
BAA15671
GeneID 12931888
946371
KEGG ecj:Y75_p1836
eco:b1860
PATRIC 32119043
EchoBASE EB0917
EcoGene EG10924
eggNOG COG2255
HOGENOM HOG000218623
InParanoid P0A812
KO K03551
OMA DRFGMSF
OrthoDB EOG6SR93S
PhylomeDB P0A812
BioCyc EcoCyc:EG10924-MONOMER
ECOL316407:JW1849-MONOMER
MetaCyc:EG10924-MONOMER
PRO PR:P0A812
Proteomes UP000000318
UP000000625
Genevestigator P0A812
GO GO:0005737
GO:0048476
GO:0005524
GO:0004003
GO:0003677
GO:0009378
GO:0032508
GO:0000725
GO:0009432
Gene3D 1.10.10.10
3.40.50.300
HAMAP MF_00016
InterPro IPR003593
IPR004605
IPR008823
IPR008824
IPR027417
IPR011991
Pfam PF05491
PF05496
ProDom PD005323
SMART SM00382
SUPFAM SSF52540
TIGRFAMs TIGR00635

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0004003

ATP-dependent DNA helicase activity

PMID:8433990[1]

ECO:0000314

F

Figure one shows the catalyzed unwinding of the oligonucleotide from the single-stranded circle

complete
CACAO 2048

enables

GO:0004003

ATP-dependent DNA helicase activity

PMID:8433990[1]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0048476

Holliday junction resolvase complex

PMID:9160752[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0009432

SOS response

PMID:2842314[3]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009432

SOS response

PMID:3279394[4]

ECO:0000245

automatically integrated combinatorial evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009411

response to UV

PMID:27718375[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0009378

four-way junction helicase activity

PMID:1617728[6]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0009378

four-way junction helicase activity

PMID:1608954[7]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:18304323[8]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0000725

recombinational repair

PMID:6374379[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032508

DNA duplex unwinding

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0009378

P

Seeded From UniProt

complete

involved_in

GO:0032508

DNA duplex unwinding

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0009378

P

Seeded From UniProt

complete

involved_in

GO:0032508

DNA duplex unwinding

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0009378

P

Seeded From UniProt

complete

involved_in

GO:0032508

DNA duplex unwinding

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0009378

P

Seeded From UniProt

complete

involved_in

GO:0032508

DNA duplex unwinding

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004003

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR004605
InterPro:IPR008823

F

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR004605

F

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR004605
InterPro:IPR008823
InterPro:IPR008824

P

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR004605
InterPro:IPR008823
InterPro:IPR008824

P

Seeded From UniProt

complete

enables

GO:0009378

four-way junction helicase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR004605
InterPro:IPR008823
InterPro:IPR008824

F

Seeded From UniProt

complete

enables

GO:0009378

four-way junction helicase activity

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000001405

F

Seeded From UniProt

complete

involved_in

GO:0009432

SOS response

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000001405

P

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000001405

P

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000001405

F

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000001405

P

Seeded From UniProt

complete

enables

GO:0004386

helicase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0347

F

Seeded From UniProt

complete

enables

GO:0000166

nucleotide binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0547

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

involved_in

GO:0009432

SOS response

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0742

P

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0233

P

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0067

F

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0234

P

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0227

P

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

edit table

Notes

References

See Help:References for how to manage references in GONUTS.

  1. ↑ 1.0 1.1 Tsaneva, IR et al. (1993) RuvA and RuvB proteins of Escherichia coli exhibit DNA helicase activity in vitro. Proc. Natl. Acad. Sci. U.S.A. 90 1315-9 PubMed GONUTS page
  2. ↑ Eggleston, AK et al. (1997) In vitro reconstitution of the late steps of genetic recombination in E. coli. Cell 89 607-17 PubMed GONUTS page
  3. ↑ Shinagawa, H et al. (1988) Structure and regulation of the Escherichia coli ruv operon involved in DNA repair and recombination. J. Bacteriol. 170 4322-9 PubMed GONUTS page
  4. ↑ Benson, FE et al. (1988) Nucleotide sequencing of the ruv region of Escherichia coli K-12 reveals a LexA regulated operon encoding two genes. Nucleic Acids Res. 16 1541-9 PubMed GONUTS page
  5. ↑ Sargentini, NJ et al. () Screen for genes involved in radiation survival of Escherichia coli and construction of a reference database. Mutat. Res. 793-794 1-14 PubMed GONUTS page
  6. ↑ Tsaneva, IR et al. (1992) ATP-dependent branch migration of Holliday junctions promoted by the RuvA and RuvB proteins of E. coli. Cell 69 1171-80 PubMed GONUTS page
  7. ↑ Parsons, CA et al. (1992) Interaction of Escherichia coli RuvA and RuvB proteins with synthetic Holliday junctions. Proc. Natl. Acad. Sci. U.S.A. 89 5452-6 PubMed GONUTS page
  8. ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page
  9. ↑ Lloyd, RG et al. (1984) Effect of ruv mutations on recombination and DNA repair in Escherichia coli K12. Mol. Gen. Genet. 194 303-9 PubMed GONUTS page
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