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ECOLI:RUVA

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Species (Taxon ID) Escherichia coli (strain K12). (83333)
Gene Name(s) ruvA (ECO:0000255 with HAMAP-Rule:MF_00031)
Protein Name(s) Holliday junction ATP-dependent DNA helicase RuvA (ECO:0000255 with HAMAP-Rule:MF_00031)
External Links
UniProt P0A809
EMBL X07091
M21298
U00096
AP009048
D10165
PIR E64948
RefSeq NP_416375.1
YP_490123.1
PDB 1BDX
1C7Y
1CUK
1D8L
1HJP
PDBsum 1BDX
1C7Y
1CUK
1D8L
1HJP
ProteinModelPortal P0A809
SMR P0A809
DIP DIP-48064N
IntAct P0A809
MINT MINT-1321234
STRING 511145.b1861
PaxDb P0A809
PRIDE P0A809
EnsemblBacteria AAC74931
BAA15672
GeneID 12930344
946369
KEGG ecj:Y75_p1837
eco:b1861
PATRIC 32119045
EchoBASE EB0916
EcoGene EG10923
eggNOG COG0632
HOGENOM HOG000057116
InParanoid P0A809
KO K03550
OMA LTQFIVR
OrthoDB EOG679THG
PhylomeDB P0A809
BioCyc EcoCyc:EG10923-MONOMER
ECOL316407:JW1850-MONOMER
MetaCyc:EG10923-MONOMER
EvolutionaryTrace P0A809
PRO PR:P0A809
Proteomes UP000000318
UP000000625
Genevestigator P0A809
GO GO:0005737
GO:0009379
GO:0048476
GO:0005524
GO:0003677
GO:0009378
GO:0032508
GO:0000725
GO:0009432
Gene3D 2.40.50.140
HAMAP MF_00031
InterPro IPR011114
IPR013849
IPR003583
IPR012340
IPR000085
IPR010994
Pfam PF07499
PF01330
SMART SM00278
SUPFAM SSF46929
SSF47781
SSF50249
TIGRFAMs TIGR00084

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

enables

GO:0042802

identical protein binding

PMID:9628481[1]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P0A809

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:7885479[2]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P0A809

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:24561554[3]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P0A809

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:10890893[4]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P0A809

F

Seeded From UniProt

complete

involved_in

GO:0051289

protein homotetramerization

PMID:9493263[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0048476

Holliday junction resolvase complex

PMID:9160752[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0009432

SOS response

PMID:2842314[7]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009432

SOS response

PMID:3279394[8]

ECO:0000245

automatically integrated combinatorial evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0009379

Holliday junction helicase complex

PMID:1617728[9]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0009378

four-way junction helicase activity

PMID:1617728[9]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0009314

response to radiation

PMID:27718375[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0000725

recombinational repair

PMID:6374379[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0000400

four-way junction DNA binding

PMID:9493263[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0032508

DNA duplex unwinding

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0003678

P

Seeded From UniProt

complete

involved_in

GO:0032508

DNA duplex unwinding

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0009378

P

Seeded From UniProt

complete

involved_in

GO:0032508

DNA duplex unwinding

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0009378

P

Seeded From UniProt

complete

involved_in

GO:0032508

DNA duplex unwinding

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0009378

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR003583

F

Seeded From UniProt

complete

enables

GO:0003678

DNA helicase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000085

F

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR011114
InterPro:IPR013849

F

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000085
InterPro:IPR003583
InterPro:IPR011114
InterPro:IPR013849

P

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000085
InterPro:IPR011114
InterPro:IPR013849

P

Seeded From UniProt

complete

enables

GO:0009378

four-way junction helicase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR011114
InterPro:IPR013849

F

Seeded From UniProt

complete

part_of

GO:0009379

Holliday junction helicase complex

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR011114

C

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000037439

P

Seeded From UniProt

complete

involved_in

GO:0009432

SOS response

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000037439

P

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000037439

P

Seeded From UniProt

complete

enables

GO:0009378

four-way junction helicase activity

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000037439

F

Seeded From UniProt

complete

enables

GO:0004386

helicase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0347

F

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0234

P

Seeded From UniProt

complete

enables

GO:0000166

nucleotide binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0547

F

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0067

F

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0227

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

involved_in

GO:0009432

SOS response

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0742

P

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0233

P

Seeded From UniProt

complete

edit table

Notes

References

See Help:References for how to manage references in GONUTS.

  1. ↑ Hargreaves, D et al. (1998) Crystal structure of E.coli RuvA with bound DNA Holliday junction at 6 A resolution. Nat. Struct. Biol. 5 441-6 PubMed GONUTS page
  2. ↑ Parsons, CA et al. (1995) Structure of a multisubunit complex that promotes DNA branch migration. Nature 374 375-8 PubMed GONUTS page
  3. ↑ Rajagopala, SV et al. (2014) The binary protein-protein interaction landscape of Escherichia coli. Nat. Biotechnol. 32 285-90 PubMed GONUTS page
  4. ↑ Ariyoshi, M et al. (2000) Crystal structure of the holliday junction DNA in complex with a single RuvA tetramer. Proc. Natl. Acad. Sci. U.S.A. 97 8257-62 PubMed GONUTS page
  5. ↑ 5.0 5.1 Nishino, T et al. (1998) Functional analyses of the domain structure in the Holliday junction binding protein RuvA. Structure 6 11-21 PubMed GONUTS page
  6. ↑ Eggleston, AK et al. (1997) In vitro reconstitution of the late steps of genetic recombination in E. coli. Cell 89 607-17 PubMed GONUTS page
  7. ↑ Shinagawa, H et al. (1988) Structure and regulation of the Escherichia coli ruv operon involved in DNA repair and recombination. J. Bacteriol. 170 4322-9 PubMed GONUTS page
  8. ↑ Benson, FE et al. (1988) Nucleotide sequencing of the ruv region of Escherichia coli K-12 reveals a LexA regulated operon encoding two genes. Nucleic Acids Res. 16 1541-9 PubMed GONUTS page
  9. ↑ 9.0 9.1 Tsaneva, IR et al. (1992) ATP-dependent branch migration of Holliday junctions promoted by the RuvA and RuvB proteins of E. coli. Cell 69 1171-80 PubMed GONUTS page
  10. ↑ Sargentini, NJ et al. () Screen for genes involved in radiation survival of Escherichia coli and construction of a reference database. Mutat. Res. 793-794 1-14 PubMed GONUTS page
  11. ↑ Lloyd, RG et al. (1984) Effect of ruv mutations on recombination and DNA repair in Escherichia coli K12. Mol. Gen. Genet. 194 303-9 PubMed GONUTS page
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