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ECOLI:OXAA

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Species (Taxon ID) Escherichia coli (strain K12). (83333)
Gene Name(s) yidC
Protein Name(s) Membrane protein insertase YidC

Foldase YidC Inner membrane protein YidC Membrane integrase YidC Oxa1Ec

External Links
UniProt P25714
EMBL L10328
U00096
AP009048
M11056
PIR B65173
RefSeq NP_418161.1
YP_491729.1
PDB 3BLC
3BS6
4UTQ
PDBsum 3BLC
3BS6
4UTQ
ProteinModelPortal P25714
SMR P25714
DIP DIP-12442N
IntAct P25714
MINT MINT-6477960
STRING 511145.b3705
TCDB 2.A.9.3.1
PaxDb P25714
PRIDE P25714
DNASU 948214
EnsemblBacteria AAC76728
BAE77588
GeneID 12932517
948214
KEGG ecj:Y75_p3467
eco:b3705
PATRIC 32122907
EchoBASE EB1183
EcoGene EG11197
eggNOG COG0706
HOGENOM HOG000101822
InParanoid P25714
KO K03217
OMA GSSEPFQ
OrthoDB EOG6X6RF2
PhylomeDB P25714
BioCyc EcoCyc:YIDC
ECOL316407:JW3683-MONOMER
EvolutionaryTrace P25714
PRO PR:P25714
Proteomes UP000000318
UP000000625
Genevestigator P25714
GO GO:0016021
GO:0005887
GO:0005886
GO:0032977
GO:0006461
GO:0006457
GO:0051260
GO:0051205
HAMAP MF_01810
InterPro IPR019998
IPR028055
IPR028053
IPR001708
PANTHER PTHR12428
Pfam PF02096
PF14849
PRINTS PR00701
PR01900
TIGRFAMs TIGR03593
TIGR03592

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0016021

integral to membrane

PMID:20061485[1]

ECO:0000315

C

Fig. 2 shows mutation in cell growth under oxaA (yidC) depletion

complete

part_of

GO:0016021

integral component of membrane

PMID:18456666[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0065003

protein-containing complex assembly

PMID:18456666[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006457

protein folding

PMID:18456666[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

PMID:18456666[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0051205

protein insertion into membrane

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG11197
PANTHER:PTN000276804
PomBase:SPCC1442.15c
SGD:S000000956
SGD:S000003294
UniProtKB:Q8N8Q8

P

Seeded From UniProt

complete

enables

GO:0032977

membrane insertase activity

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG11197
PANTHER:PTN000276804
PomBase:SPCC1442.15c
SGD:S000000956
SGD:S000003294
UniProtKB:Q8N8Q8

F

Seeded From UniProt

complete

part_of

GO:0005887

integral component of plasma membrane

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG11197
PANTHER:PTN000276930
UniProtKB:P9WIT5

C

Seeded From UniProt

complete

involved_in

GO:0051205

protein insertion into membrane

PMID:10949305[4]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0032977

membrane insertase activity

PMID:10949305[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

PMID:10675323[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0051260

protein homooligomerization

PMID:23872420[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051205

protein insertion into membrane

PMID:23872420[6]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0032977

membrane insertase activity

PMID:23872420[6]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0005887

integral component of plasma membrane

PMID:9804807[7]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005887

integral component of plasma membrane

PMID:9804807[7]

ECO:0000245

automatically integrated combinatorial evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

PMID:17309111[8]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001708
InterPro:IPR019998

C

Seeded From UniProt

complete

enables

GO:0032977

membrane insertase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001708
InterPro:IPR019998

F

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000057588

C

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000037
GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0997
UniProtKB-KW:KW-1003
UniProtKB-SubCell:SL-0037

C

Seeded From UniProt

complete

involved_in

GO:0015031

protein transport

GO_REF:0000037
GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0653
UniProtKB-KW:KW-0811

P

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0812

C

Seeded From UniProt

complete

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Notes

References

See Help:References for how to manage references in GONUTS.

  1. ↑ Wang, P et al. (2010) Global change of gene expression and cell physiology in YidC-depleted Escherichia coli. J. Bacteriol. 192 2193-209 PubMed GONUTS page
  2. ↑ 2.0 2.1 2.2 2.3 Wagner, S et al. (2008) Biogenesis of MalF and the MalFGK(2) maltose transport complex in Escherichia coli requires YidC. J. Biol. Chem. 283 17881-90 PubMed GONUTS page
  3. ↑ 3.0 3.1 3.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  4. ↑ 4.0 4.1 Samuelson, JC et al. (2000) YidC mediates membrane protein insertion in bacteria. Nature 406 637-41 PubMed GONUTS page
  5. ↑ Scotti, PA et al. (2000) YidC, the Escherichia coli homologue of mitochondrial Oxa1p, is a component of the Sec translocase. EMBO J. 19 542-9 PubMed GONUTS page
  6. ↑ 6.0 6.1 6.2 Robinson, PJ & Woolhead, CA (2013) Post-translational membrane insertion of an endogenous YidC substrate. Biochim. Biophys. Acta 1833 2781-8 PubMed GONUTS page
  7. ↑ 7.0 7.1 Sääf, A et al. (1998) Membrane topology of the 60-kDa Oxa1p homologue from Escherichia coli. J. Biol. Chem. 273 30415-8 PubMed GONUTS page
  8. ↑ Zhang, N et al. (2007) Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Proteomics 7 484-93 PubMed GONUTS page
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