GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ECOLI:LOLE
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | lolE (synonyms: ycfW) | |
| Protein Name(s) | Lipoprotein-releasing system transmembrane protein LolE | |
| External Links | ||
| UniProt | P75958 | |
| EMBL | U00096 AP009048 | |
| PIR | C64856 | |
| RefSeq | NP_415636.1 YP_489386.1 | |
| ProteinModelPortal | P75958 | |
| IntAct | P75958 | |
| MINT | MINT-8401583 | |
| STRING | 511145.b1118 | |
| TCDB | 3.A.1.125.1 | |
| PRIDE | P75958 | |
| EnsemblBacteria | AAC74202 BAA35938 | |
| GeneID | 12933911 945665 | |
| KEGG | ecj:Y75_p1088 eco:b1118 | |
| PATRIC | 32117483 | |
| EchoBASE | EB3215 | |
| EcoGene | EG13441 | |
| eggNOG | COG4591 | |
| HOGENOM | HOG000218040 | |
| InParanoid | P75958 | |
| KO | K09808 | |
| OMA | MIPNSDA | |
| OrthoDB | EOG68SVTW | |
| PhylomeDB | P75958 | |
| BioCyc | EcoCyc:YCFW-MONOMER ECOL316407:JW1104-MONOMER | |
| PRO | PR:P75958 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P75958 | |
| GO | GO:0009276 GO:0005887 GO:0043234 GO:0042954 GO:0042953 | |
| InterPro | IPR003838 IPR011926 IPR011925 IPR025857 | |
| Pfam | PF02687 PF12704 | |
| TIGRFAMs | TIGR02212 TIGR02213 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0089705 |
protein localization to outer membrane |
ECO:0000314 |
P |
Fig1C |
complete | |||||
| GO:0044874 |
lipoprotein localization to outer membrane |
ECO:0000314 |
P |
Fig1C |
complete | |||||
|
part_of |
GO:0098797 |
plasma membrane protein complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG13439 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0044874 |
lipoprotein localization to outer membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG13439 |
P |
Seeded From UniProt |
complete | ||
| GO:0005886 |
plasma membrane |
ECO:0000314 |
C |
Fig2C |
complete | |||||
|
involved_in |
GO:0042953 |
lipoprotein transport |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002524722 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0098797 |
plasma membrane protein complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0044874 |
lipoprotein localization to outer membrane |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0044874 |
lipoprotein localization to outer membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005887 |
integral component of plasma membrane |
ECO:0000255 |
match to sequence model evidence used in manual assertion |
C |
Seeded From UniProt |
Missing: with/from | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0042953 |
lipoprotein transport |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0044874 |
lipoprotein localization to outer membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-1003 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Yakushi, T et al. (2000) A new ABC transporter mediating the detachment of lipid-modified proteins from membranes. Nat. Cell Biol. 2 212-8 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Narita, S et al. (2002) Disruption of lolCDE, encoding an ATP-binding cassette transporter, is lethal for Escherichia coli and prevents release of lipoproteins from the inner membrane. J. Bacteriol. 184 1417-22 PubMed GONUTS page
- ↑ Zhang, N et al. (2007) Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Proteomics 7 484-93 PubMed GONUTS page
- ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed GONUTS page
b
