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ECOLI:HFQ
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | hfq (ECO:0000255 with HAMAP-Rule:MF_00436) | |
| Protein Name(s) | RNA-binding protein Hfq (ECO:0000255 with HAMAP-Rule:MF_00436)
HF-1 Host factor-I protein HF-I | |
| External Links | ||
| UniProt | P0A6X3 | |
| EMBL | D00743 U14003 U00096 AP009048 M63655 U00005 | |
| PIR | S26832 | |
| RefSeq | NP_418593.1 YP_492314.1 | |
| PDB | 1HK9 1M7C 1OOU 1OOV 2Y90 2YHT 3GIB 3QHS 3QO3 3RER 3RES 3VU3 4JRI 4JRK 4JUV | |
| PDBsum | 1HK9 1M7C 1OOU 1OOV 2Y90 2YHT 3GIB 3QHS 3QO3 3RER 3RES 3VU3 4JRI 4JRK 4JUV | |
| ProteinModelPortal | P0A6X3 | |
| SMR | P0A6X3 | |
| DIP | DIP-36047N | |
| IntAct | P0A6X3 | |
| MINT | MINT-8200668 | |
| STRING | 511145.b4172 | |
| PaxDb | P0A6X3 | |
| PRIDE | P0A6X3 | |
| EnsemblBacteria | AAC77129 BAE78173 | |
| GeneID | 12932256 948689 | |
| KEGG | ecj:Y75_p4058 eco:b4172 | |
| PATRIC | 32123917 | |
| EchoBASE | EB0433 | |
| EcoGene | EG10438 | |
| eggNOG | COG1923 | |
| HOGENOM | HOG000004931 | |
| InParanoid | P0A6X3 | |
| KO | K03666 | |
| OMA | RRDGHAQ | |
| OrthoDB | EOG68SW3W | |
| PhylomeDB | P0A6X3 | |
| BioCyc | EcoCyc:EG10438-MONOMER ECOL316407:JW4130-MONOMER | |
| EvolutionaryTrace | P0A6X3 | |
| PRO | PR:P0A6X3 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P0A6X3 | |
| GO | GO:0003681 GO:0003723 GO:0040033 GO:0045975 GO:0006355 | |
| HAMAP | MF_00436 | |
| InterPro | IPR005001 IPR010920 IPR001163 | |
| Pfam | PF01423 | |
| SUPFAM | SSF50182 | |
| TIGRFAMs | TIGR02383 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0061157 |
mRNA destabilization |
ECO:0000314 |
P |
Fig 5.Hfq specifically binds to traJ 5' UTR. |
complete | |||||
| GO:0010529 |
negative regulation of transposition |
ECO:0000315 |
P |
tables 1 and 2 |
complete | |||||
|
involved_in |
GO:0045974 |
regulation of translation, ncRNA-mediated |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002164223 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0043487 |
regulation of RNA stability |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002164223 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10438 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10438 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0040033 |
negative regulation of translation, ncRNA-mediated |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003681 |
bent DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0045975 |
positive regulation of translation, ncRNA-mediated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000030788 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Will, WR & Frost, LS (2006) Hfq is a regulator of F-plasmid TraJ and TraM synthesis in Escherichia coli. J. Bacteriol. 188 124-31 PubMed GONUTS page
- ↑ Ross, JA et al. (2010) Tn10/IS10 transposition is downregulated at the level of transposase expression by the RNA-binding protein Hfq. Mol. Microbiol. 78 607-21 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Pulvermacher, SC et al. (2009) Role of the sRNA GcvB in regulation of cycA in Escherichia coli. Microbiology (Reading, Engl.) 155 106-14 PubMed GONUTS page
- ↑ Azam, TA & Ishihama, A (1999) Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity. J. Biol. Chem. 274 33105-13 PubMed GONUTS page
- ↑ Muffler, A et al. (1996) The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli. Genes Dev. 10 1143-51 PubMed GONUTS page
- ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page
- ↑ Zhang, A et al. (1998) The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein. EMBO J. 17 6061-8 PubMed GONUTS page
