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ECOLI:BASS
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | basS (synonyms: pmrB) | |
| Protein Name(s) | Sensor protein BasS | |
| External Links | ||
| UniProt | P30844 | |
| EMBL | D14055 U14003 U00096 AP009048 | |
| PIR | JX0285 | |
| RefSeq | NP_418536.1 YP_492255.1 | |
| ProteinModelPortal | P30844 | |
| SMR | P30844 | |
| DIP | DIP-9202N | |
| IntAct | P30844 | |
| MINT | MINT-1257146 | |
| STRING | 511145.b4112 | |
| EnsemblBacteria | AAC77073 BAE78114 | |
| GeneID | 12934090 948632 | |
| KEGG | ecj:Y75_p3999 eco:b4112 | |
| PATRIC | 32123789 | |
| EchoBASE | EB1571 | |
| EcoGene | EG11614 | |
| eggNOG | COG0642 | |
| HOGENOM | HOG000127051 | |
| InParanoid | P30844 | |
| KO | K07643 | |
| OMA | NESPNIE | |
| OrthoDB | EOG6G4VQG | |
| PhylomeDB | P30844 | |
| BioCyc | EcoCyc:BASS-MONOMER ECOL316407:JW4073-MONOMER | |
| BRENDA | 2.7.13.3 | |
| PRO | PR:P30844 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P30844 | |
| GO | GO:0016021 GO:0005886 GO:0005524 GO:0000155 GO:0004673 GO:0016772 GO:0018106 GO:0000160 GO:0010041 GO:0023014 | |
| Gene3D | 1.10.287.130 3.30.565.10 | |
| InterPro | IPR003661 IPR003660 IPR003594 IPR004358 IPR005467 IPR009082 | |
| Pfam | PF00672 PF02518 PF00512 | |
| PRINTS | PR00344 | |
| SMART | SM00304 SM00387 SM00388 | |
| SUPFAM | SSF47384 SSF55874 | |
| PROSITE | PS50885 PS50109 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10732 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0000160 |
phosphorelay signal transduction system |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001976770 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0023014 |
signal transduction by protein phosphorylation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0018106 |
peptidyl-histidine phosphorylation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000245 |
automatically integrated combinatorial evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0010041 |
response to iron(III) ion |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
| GO:0009242 |
colanic acid biosynthetic process |
ECO:0000317 |
|
P |
Tables 4 and 5 from 18578884 (Denton et al., 2008) describe the computational analysis of a data set from Oshima et al (12366850). Many of the genes of the colanic acid operon (wca) are regulated by this protein. |
complete | ||||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004673 |
protein histidine kinase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000155 |
phosphorelay sensor kinase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000155 |
phosphorelay sensor kinase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0007165 |
signal transduction |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0016310 |
phosphorylation |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016772 |
transferase activity, transferring phosphorus-containing groups |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004673 |
protein histidine kinase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016740 |
transferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0000160 |
phosphorelay signal transduction system |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-1003 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0016310 |
phosphorylation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016301 |
kinase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 Yamamoto, K et al. (2005) Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli. J. Biol. Chem. 280 1448-56 PubMed GONUTS page
- ↑ 3.0 3.1 Nagasawa, S et al. (1993) Novel members of the two-component signal transduction genes in Escherichia coli. J. Biochem. 114 350-7 PubMed GONUTS page
- ↑ Chamnongpol, S et al. (2002) Fe(III)-mediated cellular toxicity. Mol. Microbiol. 45 711-9 PubMed GONUTS page
- ↑ Zhang, N et al. (2007) Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Proteomics 7 484-93 PubMed GONUTS page
- ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed GONUTS page
- ↑ Denton, AM et al. (2008) Relating gene expression data on two-component systems to functional annotations in Escherichia coli. BMC Bioinformatics 9 294 PubMed GONUTS page
- ↑ Oshima, T et al. (2002) Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12. Mol. Microbiol. 46 281-91 PubMed GONUTS page
