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DEIRA:DPO1
Contents
Species (Taxon ID) | Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422). (243230) | |
Gene Name(s) | polA | |
Protein Name(s) | DNA polymerase I
POL I | |
External Links | ||
UniProt | P52027 | |
EMBL | L14581 AE000513 | |
PIR | A40597 | |
RefSeq | NP_295430.1 | |
ProteinModelPortal | P52027 | |
STRING | 243230.DR_1707 | |
PRIDE | P52027 | |
EnsemblBacteria | AAF11264 | |
GeneID | 1800388 | |
KEGG | dra:DR_1707 | |
PATRIC | 21631046 | |
eggNOG | COG0258 | |
HOGENOM | HOG000020997 | |
InParanoid | P52027 | |
KO | K02335 | |
OMA | KANRPPM | |
OrthoDB | EOG6SJJH7 | |
BioCyc | DRAD243230:GH46-1738-MONOMER | |
Proteomes | UP000002524 | |
GO | GO:0003677 GO:0003887 GO:0004527 GO:0001882 GO:0006281 GO:0006261 | |
Gene3D | 3.30.420.10 3.40.50.1010 | |
InterPro | IPR020046 IPR020045 IPR002421 IPR019760 IPR001098 IPR018320 IPR002298 IPR008918 IPR003583 IPR029060 IPR012337 IPR015361 | |
Pfam | PF01367 PF02739 PF00476 PF09281 | |
PRINTS | PR00868 | |
SMART | SM00475 SM00278 SM00279 SM00482 | |
SUPFAM | SSF47807 SSF53098 SSF88723 | |
TIGRFAMs | TIGR00593 | |
PROSITE | PS00447 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0003887 |
DNA-directed DNA polymerase activity |
ECO:0000315 |
F |
An activity gel assay showed that mutant strains were deficient in DNA polymerase activity. (see figure 6) |
complete | |||||
enables |
GO:0008409 |
5'-3' exonuclease activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10746 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10746 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006261 |
DNA-dependent DNA replication |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10746 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10746 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003887 |
DNA-directed DNA polymerase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10746 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0071897 |
DNA biosynthetic process |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0003887 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0071897 |
DNA biosynthetic process |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0003887 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0071897 |
DNA biosynthetic process |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0003887 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0071897 |
DNA biosynthetic process |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0003887 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0008409 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004527 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004518 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0001882 |
nucleoside binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003676 |
nucleic acid binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR001098 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003824 |
catalytic activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003887 |
DNA-directed DNA polymerase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR001098 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006260 |
DNA replication |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR001098 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006261 |
DNA-dependent DNA replication |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003887 |
DNA-directed DNA polymerase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006260 |
DNA replication |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0004518 |
nuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0016779 |
nucleotidyltransferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003887 |
DNA-directed DNA polymerase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0004527 |
exonuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0016740 |
transferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Gutman, PD et al. (1993) Identification, sequencing, and targeted mutagenesis of a DNA polymerase gene required for the extreme radioresistance of Deinococcus radiodurans. J. Bacteriol. 175 3581-90 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
b
d
- Deinococcaceae
- Deinococcales
- Deinococci
- Deinococcus
- Deinococcus-Thermus
- Deinococcus radiodurans
- GO:0003887 ! DNA-directed DNA polymerase activity
- GO:0006261 ! DNA-templated DNA replication
- GO:0003677 ! DNA binding
- GO:0071897 ! DNA biosynthetic process
- GO:0006974 ! DNA damage response
- GO:0006281 ! DNA repair
- GO:0006260 ! DNA replication
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