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DANRE:Q2VF27

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Species (Taxon ID) Danio rerio (Zebrafish) (Brachydanio rerio). (7955)
Gene Name(s) pkd2 (ECO:0000313 with ZFIN:ZDB-GENE-040827-4)
Protein Name(s) Polycystin-2 (ECO:0000313 with EMBL:ABA60692.1)
External Links
UniProt Q2VF27
EMBL DQ175629
UniGene Dr.92211
STRING 7955.ENSDARP00000027024
ZFIN ZDB-GENE-040827-4
eggNOG NOG325704
HOGENOM HOG000230858
HOVERGEN HBG014945
GO GO:0016020
GO:0005509
Gene3D 1.10.238.10
InterPro IPR011992
IPR002048
IPR013122
IPR003915
Pfam PF08016
PRINTS PR01433
PROSITE PS50222

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0007507

heart development

PMID:23376035[1]

ECO:0000315

P

Figure 3

complete
CACAO 6480

GO:0051284

positive regulation of sequestering of calcium ion

PMID:23376035[1]

ECO:0000315

P

Figure 6

complete
CACAO 6481

involved_in

GO:0051262

protein tetramerization

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q13563

P

Seeded From UniProt

complete

part_of

GO:0034703

cation channel complex

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q13563

C

Seeded From UniProt

complete

part_of

GO:0005887

integral component of plasma membrane

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q13563

C

Seeded From UniProt

complete

enables

GO:0005261

cation channel activity

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q13563

F

Seeded From UniProt

complete

involved_in

GO:0098662

inorganic cation transmembrane transport

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q13563

P

Seeded From UniProt

complete

involved_in

GO:0051290

protein heterotetramerization

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q13563

P

Seeded From UniProt

complete

involved_in

GO:0198738

cell-cell signaling by wnt

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q13563

P

Seeded From UniProt

complete

enables

GO:0015271

outward rectifier potassium channel activity

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:O35245

F

Seeded From UniProt

complete

enables

GO:0005262

calcium channel activity

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:O35245

F

Seeded From UniProt

complete

involved_in

GO:0071805

potassium ion transmembrane transport

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:O35245

P

Seeded From UniProt

complete

involved_in

GO:0071277

cellular response to calcium ion

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:O35245

P

Seeded From UniProt

complete

involved_in

GO:0070588

calcium ion transmembrane transport

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:O35245

P

Seeded From UniProt

complete

involved_in

GO:0051284

positive regulation of sequestering of calcium ion

PMID:23376035[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007507

heart development

PMID:23376035[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0097704

cellular response to oscillatory fluid shear stress

PMID:25959969[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-GENO-980202-1193

P

Seeded From UniProt

complete

involved_in

GO:0072114

pronephros morphogenesis

PMID:28769124[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4

P

Seeded From UniProt

complete

involved_in

GO:0072114

pronephros morphogenesis

PMID:20168298[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4

P

Seeded From UniProt

complete

involved_in

GO:0072019

proximal convoluted tubule development

PMID:19127979[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070129-4

P

Seeded From UniProt

complete

involved_in

GO:0070121

Kupffer's vesicle development

PMID:26432887[6]

ECO:0000316

genetic interaction evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4
ZFIN:ZDB-MRPHLNO-070620-5
ZFIN:ZDB-MRPHLNO-160201-1

P

Seeded From UniProt

complete

involved_in

GO:0070121

Kupffer's vesicle development

PMID:26432887[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4
ZFIN:ZDB-MRPHLNO-070620-5

P

Seeded From UniProt

complete

involved_in

GO:0061371

determination of heart left/right asymmetry

PMID:25660539[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4

P

Seeded From UniProt

complete

involved_in

GO:0061371

determination of heart left/right asymmetry

PMID:25660539[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-GENO-040830-2

P

Seeded From UniProt

complete

involved_in

GO:0048793

pronephros development

PMID:24700876[8]

ECO:0000316

genetic interaction evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4
ZFIN:ZDB-MRPHLNO-150814-3

P

Seeded From UniProt

complete

involved_in

GO:0048793

pronephros development

PMID:21752935[9]

ECO:0000316

genetic interaction evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4
ZFIN:ZDB-MRPHLNO-100823-10

P

Seeded From UniProt

complete

involved_in

GO:0048793

pronephros development

PMID:20729296[10]

ECO:0000316

genetic interaction evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4
ZFIN:ZDB-MRPHLNO-101122-2

P

Seeded From UniProt

complete

involved_in

GO:0048793

pronephros development

PMID:19801576[11]

ECO:0000316

genetic interaction evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070129-2
ZFIN:ZDB-MRPHLNO-100224-1

P

Seeded From UniProt

complete

involved_in

GO:0048793

pronephros development

PMID:19801576[11]

ECO:0000316

genetic interaction evidence used in manual assertion

ZFIN:ZDB-GENE-040426-770

P

Seeded From UniProt

complete

involved_in

GO:0048793

pronephros development

PMID:26839368[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4

P

Seeded From UniProt

complete

involved_in

GO:0048793

pronephros development

PMID:21752935[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4

P

Seeded From UniProt

complete

involved_in

GO:0048793

pronephros development

PMID:18695040[13]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070129-2

P

Seeded From UniProt

complete

involved_in

GO:0048793

pronephros development

PMID:18417723[14]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070129-3

P

Seeded From UniProt

complete

involved_in

GO:0048793

pronephros development

PMID:16943304[15]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070129-2

P

Seeded From UniProt

complete

involved_in

GO:0032965

regulation of collagen biosynthetic process

PMID:20335443[16]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070129-4

P

Seeded From UniProt

complete

part_of

GO:0016328

lateral plasma membrane

PMID:16551655[17]

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q13563

C

Seeded From UniProt

complete

part_of

GO:0016323

basolateral plasma membrane

PMID:18701462[18]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0016323

basolateral plasma membrane

PMID:18417723[14]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0010882

regulation of cardiac muscle contraction by calcium ion signaling

PMID:23376035[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-GENO-100715-11

P

Seeded From UniProt

complete

involved_in

GO:0009953

dorsal/ventral pattern formation

PMID:19488022[19]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4

P

Seeded From UniProt

complete

involved_in

GO:0007368

determination of left/right symmetry

PMID:21490950[20]

ECO:0000316

genetic interaction evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4
ZFIN:ZDB-MRPHLNO-110527-1

P

Seeded From UniProt

complete

involved_in

GO:0007368

determination of left/right symmetry

PMID:9334285[21]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007368

determination of left/right symmetry

PMID:25660539[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4

P

Seeded From UniProt

complete

involved_in

GO:0007368

determination of left/right symmetry

PMID:25660539[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-GENO-040830-2

P

Seeded From UniProt

complete

involved_in

GO:0007368

determination of left/right symmetry

PMID:20168298[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4

P

Seeded From UniProt

complete

involved_in

GO:0007368

determination of left/right symmetry

PMID:18417723[14]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070129-3

P

Seeded From UniProt

complete

involved_in

GO:0007368

determination of left/right symmetry

PMID:17360770[22]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070620-6

P

Seeded From UniProt

complete

involved_in

GO:0007368

determination of left/right symmetry

PMID:17360770[22]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070620-5

P

Seeded From UniProt

complete

involved_in

GO:0007368

determination of left/right symmetry

PMID:17360770[22]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-GENO-980202-870

P

Seeded From UniProt

complete

involved_in

GO:0007368

determination of left/right symmetry

PMID:17360770[22]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-GENO-980202-1193

P

Seeded From UniProt

complete

involved_in

GO:0007368

determination of left/right symmetry

PMID:16943304[15]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070129-2

P

Seeded From UniProt

complete

part_of

GO:0005929

cilium

PMID:18701462[18]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005929

cilium

PMID:18417723[14]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005783

endoplasmic reticulum

PMID:18417723[14]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005783

endoplasmic reticulum

PMID:19801576[11]

ECO:0000250

sequence similarity evidence used in manual assertion

RefSeq:NM_000297.3

C

Seeded From UniProt

complete

involved_in

GO:0003171

atrioventricular valve development

PMID:25959969[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-GENO-980202-1193

P

Seeded From UniProt

complete

involved_in

GO:0003146

heart jogging

PMID:9334285[21]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0003143

embryonic heart tube morphogenesis

PMID:9334285[21]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0001947

heart looping

PMID:9334285[21]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0001947

heart looping

PMID:18417723[14]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070129-3

P

Seeded From UniProt

complete

involved_in

GO:0001946

lymphangiogenesis

PMID:24767999[23]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-070129-1

P

Seeded From UniProt

complete

involved_in

GO:0001822

kidney development

PMID:24235270[24]

ECO:0000315

mutant phenotype evidence used in manual assertion

ZFIN:ZDB-MRPHLNO-060630-4

P

Seeded From UniProt

complete

involved_in

GO:0050982

detection of mechanical stimulus

PMID:21873635[25]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1099818
PANTHER:PTN000093539
UniProtKB:E7FKV8
UniProtKB:H2LRU7

P

Seeded From UniProt

complete

part_of

GO:0016020

membrane

PMID:21873635[25]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000093539
RGD:1559992
UniProtKB:Q9P0L9
WB:WBGene00004035

C

Seeded From UniProt

complete

enables

GO:0005262

calcium channel activity

PMID:21873635[25]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1099818
MGI:MGI:1352448
PANTHER:PTN000093539
UniProtKB:Q8TDX9
UniProtKB:Q9P0L9
WB:WBGene00004035

F

Seeded From UniProt

complete

enables

GO:0005509

calcium ion binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002048
InterPro:IPR003915

F

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR003915

C

Seeded From UniProt

complete

enables

GO:0005262

calcium channel activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0107

F

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

part_of

GO:0005929

cilium

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0969
UniProtKB-SubCell:SL-0066

C

Seeded From UniProt

complete

part_of

GO:0031410

cytoplasmic vesicle

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0968

C

Seeded From UniProt

complete

involved_in

GO:0006811

ion transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0406

P

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0812

C

Seeded From UniProt

complete

involved_in

GO:0016055

Wnt signaling pathway

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0879

P

Seeded From UniProt

complete

involved_in

GO:0006816

calcium ion transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0109

P

Seeded From UniProt

complete

enables

GO:0005244

voltage-gated ion channel activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0851

F

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1003

C

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

involved_in

GO:0006813

potassium ion transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0633

P

Seeded From UniProt

complete

involved_in

GO:0070588

calcium ion transmembrane transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0107

P

Seeded From UniProt

complete

part_of

GO:0042995

cell projection

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0966

C

Seeded From UniProt

complete

part_of

GO:0016529

sarcoplasmic reticulum

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0703

C

Seeded From UniProt

complete

part_of

GO:0005856

cytoskeleton

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0206

C

Seeded From UniProt

complete

involved_in

GO:0034765

regulation of ion transmembrane transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0851

P

Seeded From UniProt

complete

part_of

GO:0005783

endoplasmic reticulum

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0256

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963

C

Seeded From UniProt

complete

enables

GO:0005267

potassium channel activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0631

F

Seeded From UniProt

complete

involved_in

GO:0071805

potassium ion transmembrane transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0631

P

Seeded From UniProt

complete

part_of

GO:0042383

sarcolemma

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0238

C

Seeded From UniProt

complete

part_of

GO:0033017

sarcoplasmic reticulum membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0241

C

Seeded From UniProt

complete

part_of

GO:0016324

apical plasma membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0015

C

Seeded From UniProt

complete

part_of

GO:0016323

basolateral plasma membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0026

C

Seeded From UniProt

complete

part_of

GO:0005789

endoplasmic reticulum membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0097

C

Seeded From UniProt

complete

part_of

GO:0030017

sarcomere

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0313

C

Seeded From UniProt

complete

part_of

GO:0030659

cytoplasmic vesicle membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0089

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 1.4 Paavola, J et al. (2013) Polycystin-2 mutations lead to impaired calcium cycling in the heart and predispose to dilated cardiomyopathy. J. Mol. Cell. Cardiol. 58 199-208 PubMed GONUTS page
  2. 2.0 2.1 Heckel, E et al. (2015) Oscillatory Flow Modulates Mechanosensitive klf2a Expression through trpv4 and trpp2 during Heart Valve Development. Curr. Biol. 25 1354-61 PubMed GONUTS page
  3. Chang, MY et al. (2017) Metformin Inhibits Cyst Formation in a Zebrafish Model of Polycystin-2 Deficiency. Sci Rep 7 7161 PubMed GONUTS page
  4. 4.0 4.1 Giamarchi, A et al. (2010) A polycystin-2 (TRPP2) dimerization domain essential for the function of heteromeric polycystin complexes. EMBO J. 29 1176-91 PubMed GONUTS page
  5. Vasilyev, A et al. (2009) Collective cell migration drives morphogenesis of the kidney nephron. PLoS Biol. 7 e9 PubMed GONUTS page
  6. 6.0 6.1 Roxo-Rosa, M et al. (2015) The zebrafish Kupffer's vesicle as a model system for the molecular mechanisms by which the lack of Polycystin-2 leads to stimulation of CFTR. Biol Open 4 1356-66 PubMed GONUTS page
  7. 7.0 7.1 7.2 7.3 Yuan, S et al. (2015) Intraciliary calcium oscillations initiate vertebrate left-right asymmetry. Curr. Biol. 25 556-67 PubMed GONUTS page
  8. Sussman, CR et al. (2014) Phosphodiesterase 1A modulates cystogenesis in zebrafish. J. Am. Soc. Nephrol. 25 2222-30 PubMed GONUTS page
  9. 9.0 9.1 Rothschild, SC et al. (2011) CaMK-II is a PKD2 target that promotes pronephric kidney development and stabilizes cilia. Development 138 3387-97 PubMed GONUTS page
  10. Hurd, T et al. (2010) The retinitis pigmentosa protein RP2 interacts with polycystin 2 and regulates cilia-mediated vertebrate development. Hum. Mol. Genet. 19 4330-44 PubMed GONUTS page
  11. 11.0 11.1 11.2 Gao, H et al. (2010) PRKCSH/80K-H, the protein mutated in polycystic liver disease, protects polycystin-2/TRPP2 against HERP-mediated degradation. Hum. Mol. Genet. 19 16-24 PubMed GONUTS page
  12. Zheng, W et al. (2016) Far Upstream Element-Binding Protein 1 Binds the 3' Untranslated Region of PKD2 and Suppresses Its Translation. J. Am. Soc. Nephrol. 27 2645-57 PubMed GONUTS page
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