GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

DANRE:NUP93

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Danio rerio (Zebrafish) (Brachydanio rerio). (7955)
Gene Name(s) dye
Protein Name(s) Nuclear pore complex protein Nup93

93 kDa nucleoporin Dead eye protein Nucleoporin Nup93

External Links
UniProt Q7ZU29
EMBL U77595
BC044466
AB047683
RefSeq NP_571056.2
UniGene Dr.653
PRIDE Q7ZU29
GeneID 30172
KEGG dre:30172
CTD 9688
ZFIN ZDB-GENE-990415-46
eggNOG NOG312233
HOGENOM HOG000007350
HOVERGEN HBG052701
InParanoid Q7ZU29
KO K14309
PhylomeDB Q7ZU29
NextBio 20806640
PRO PR:Q7ZU29
Proteomes UP000000437
GO GO:0031965
GO:0034399
GO:0005643
GO:0017056
GO:0051028
GO:0051292
GO:0015031
InterPro IPR007231
PANTHER PTHR11225
Pfam PF04097

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0032502

developmental process

PMID:8985183[1]

ECO:0000315

P

Fig. 1

complete
CACAO 3623

involved_in

GO:0051292

nuclear pore complex assembly

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q8N1F7

P

Seeded From UniProt

complete

part_of

GO:0034399

nuclear periphery

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q8N1F7

C

Seeded From UniProt

complete

part_of

GO:0031965

nuclear membrane

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q8N1F7

C

Seeded From UniProt

complete

enables

GO:0017056

structural constituent of nuclear pore

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q8N1F7

F

Seeded From UniProt

complete

part_of

GO:0005643

nuclear pore

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q8N1F7

C

Seeded From UniProt

complete

enables

GO:0017056

structural constituent of nuclear pore

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000131983
SGD:S000001898
UniProtKB:Q8N1F7

F

Seeded From UniProt

complete

involved_in

GO:0016973

poly(A)+ mRNA export from nucleus

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000131983
PomBase:SPCC1620.11

P

Seeded From UniProt

complete

involved_in

GO:0006606

protein import into nucleus

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0027537
PANTHER:PTN000131983
SGD:S000001898
WB:WBGene00003799

P

Seeded From UniProt

complete

part_of

GO:0005643

nuclear pore

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000131983
PomBase:SPCC1620.11
PomBase:SPCC1739.14
SGD:S000001898
UniProtKB:Q8N1F7

C

Seeded From UniProt

complete

part_of

GO:0005643

nuclear pore

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR007231

C

Seeded From UniProt

complete

enables

GO:0017056

structural constituent of nuclear pore

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR007231

F

Seeded From UniProt

complete

involved_in

GO:0015031

protein transport

GO_REF:0000037
GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0653
UniProtKB-KW:KW-0811

P

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

involved_in

GO:0051028

mRNA transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0509

P

Seeded From UniProt

complete

part_of

GO:0005643

nuclear pore

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0906
UniProtKB-SubCell:SL-0185

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539

C

Seeded From UniProt

complete

part_of

GO:0031965

nuclear membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0182

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Allende, ML et al. (1996) Insertional mutagenesis in zebrafish identifies two novel genes, pescadillo and dead eye, essential for embryonic development. Genes Dev. 10 3141-55 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page