GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
DANRE:N2F1B
Contents
| Species (Taxon ID) | Danio rerio (Zebrafish) (Brachydanio rerio). (7955) | |
| Gene Name(s) | nr2f1b (ECO:0000312 with ZFIN:ZDB-GENE-040426-1438) (synonyms: nr2f1l (ECO:0000312 with ZFIN:ZDB-GENE-040426-1438)) | |
| Protein Name(s) | Nuclear receptor subfamily 2 group F member 1-B (ECO:0000312 with EMBL:AAH56748.1)
COUP transcription factor 1-B (ECO:0000303 with PMID:17997606[1]) COUP-TFalpha-B (ECO:0000303 with PMID:17997606[1]) | |
| External Links | ||
| UniProt | Q6PH18 | |
| EMBL | BC056748 BC065651 | |
| RefSeq | NP_956886.1 XP_005155493.1 | |
| UniGene | Dr.86046 | |
| ProteinModelPortal | Q6PH18 | |
| SMR | Q6PH18 | |
| STRING | 7955.ENSDARP00000010118 | |
| PaxDb | Q6PH18 | |
| Ensembl | ENSDART00000027242 | |
| GeneID | 393564 | |
| KEGG | dre:393564 | |
| CTD | 393564 | |
| ZFIN | ZDB-GENE-040426-1438 | |
| eggNOG | KOG3575 ENOG410XRZC | |
| GeneTree | ENSGT00760000118948 | |
| HOGENOM | HOG000260820 | |
| HOVERGEN | HBG005606 | |
| InParanoid | Q6PH18 | |
| OMA | FMENIRI | |
| OrthoDB | EOG72RMZ5 | |
| PhylomeDB | Q6PH18 | |
| TreeFam | TF352097 | |
| NextBio | 20814585 | |
| PRO | PR:Q6PH18 | |
| Proteomes | UP000000437 | |
| Bgee | Q6PH18 | |
| GO | GO:0005634 GO:0004879 GO:0043565 GO:0003707 GO:0008270 GO:0006351 | |
| Gene3D | 1.10.565.10 3.30.50.10 | |
| InterPro | IPR003068 IPR000536 IPR001723 IPR001628 IPR013088 | |
| Pfam | PF00104 PF00105 | |
| PRINTS | PR01282 PR00398 PR00047 | |
| SMART | SM00430 SM00399 | |
| SUPFAM | SSF48508 | |
| PROSITE | PS00031 PS51030 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:1901342 |
regulation of vasculature development |
ECO:0000315 |
P |
Figure 2 shows nr2flb mutants have defects in vascular development. |
complete | |||||
| GO:0072358 |
cardiovascular system development |
ECO:0000315 |
P |
Figure 2 shows nr2flb mutants have defects in vascular development. |
complete | |||||
| GO:0035476 |
angioblast cell migration |
ECO:0000315 |
P |
Figure 5 shows decrease ISV angioblast cell migration in nr2f1b mutants. |
complete | |||||
|
involved_in |
GO:0060841 |
venous blood vessel development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
ZFIN:ZDB-MRPHLNO-160211-4 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0001944 |
vasculature development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
ZFIN:ZDB-MRPHLNO-160211-4 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0001944 |
vasculature development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
ZFIN:ZDB-MRPHLNO-160211-3 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0001944 |
vasculature development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
ZFIN:ZDB-MRPHLNO-160211-2 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0043401 |
steroid hormone mediated signaling pathway |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0003707 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003707 |
steroid hormone receptor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008270 |
zinc ion binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Bertrand, S et al. (2007) Unexpected novel relational links uncovered by extensive developmental profiling of nuclear receptor expression. PLoS Genet. 3 e188 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Li, RF et al. (2015) Nr2f1b control venous specification and angiogenic patterning during zebrafish vascular development. J. Biomed. Sci. 22 104 PubMed GONUTS page
