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DANRE:N2F1B
Contents
Species (Taxon ID) | Danio rerio (Zebrafish) (Brachydanio rerio). (7955) | |
Gene Name(s) | nr2f1b (ECO:0000312 with ZFIN:ZDB-GENE-040426-1438) (synonyms: nr2f1l (ECO:0000312 with ZFIN:ZDB-GENE-040426-1438)) | |
Protein Name(s) | Nuclear receptor subfamily 2 group F member 1-B (ECO:0000312 with EMBL:AAH56748.1)
COUP transcription factor 1-B (ECO:0000303 with PMID:17997606[1]) COUP-TFalpha-B (ECO:0000303 with PMID:17997606[1]) | |
External Links | ||
UniProt | Q6PH18 | |
EMBL | BC056748 BC065651 | |
RefSeq | NP_956886.1 XP_005155493.1 | |
UniGene | Dr.86046 | |
ProteinModelPortal | Q6PH18 | |
SMR | Q6PH18 | |
STRING | 7955.ENSDARP00000010118 | |
PaxDb | Q6PH18 | |
Ensembl | ENSDART00000027242 | |
GeneID | 393564 | |
KEGG | dre:393564 | |
CTD | 393564 | |
ZFIN | ZDB-GENE-040426-1438 | |
eggNOG | KOG3575 ENOG410XRZC | |
GeneTree | ENSGT00760000118948 | |
HOGENOM | HOG000260820 | |
HOVERGEN | HBG005606 | |
InParanoid | Q6PH18 | |
OMA | FMENIRI | |
OrthoDB | EOG72RMZ5 | |
PhylomeDB | Q6PH18 | |
TreeFam | TF352097 | |
NextBio | 20814585 | |
PRO | PR:Q6PH18 | |
Proteomes | UP000000437 | |
Bgee | Q6PH18 | |
GO | GO:0005634 GO:0004879 GO:0043565 GO:0003707 GO:0008270 GO:0006351 | |
Gene3D | 1.10.565.10 3.30.50.10 | |
InterPro | IPR003068 IPR000536 IPR001723 IPR001628 IPR013088 | |
Pfam | PF00104 PF00105 | |
PRINTS | PR01282 PR00398 PR00047 | |
SMART | SM00430 SM00399 | |
SUPFAM | SSF48508 | |
PROSITE | PS00031 PS51030 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:1901342 |
regulation of vasculature development |
ECO:0000315 |
P |
Figure 2 shows nr2flb mutants have defects in vascular development. |
complete | |||||
GO:0072358 |
cardiovascular system development |
ECO:0000315 |
P |
Figure 2 shows nr2flb mutants have defects in vascular development. |
complete | |||||
GO:0035476 |
angioblast cell migration |
ECO:0000315 |
P |
Figure 5 shows decrease ISV angioblast cell migration in nr2f1b mutants. |
complete | |||||
involved_in |
GO:0060841 |
venous blood vessel development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
ZFIN:ZDB-MRPHLNO-160211-4 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0001944 |
vasculature development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
ZFIN:ZDB-MRPHLNO-160211-4 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0001944 |
vasculature development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
ZFIN:ZDB-MRPHLNO-160211-3 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0001944 |
vasculature development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
ZFIN:ZDB-MRPHLNO-160211-2 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0043401 |
steroid hormone mediated signaling pathway |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0003707 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003707 |
steroid hormone receptor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0008270 |
zinc ion binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Bertrand, S et al. (2007) Unexpected novel relational links uncovered by extensive developmental profiling of nuclear receptor expression. PLoS Genet. 3 e188 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Li, RF et al. (2015) Nr2f1b control venous specification and angiogenic patterning during zebrafish vascular development. J. Biomed. Sci. 22 104 PubMed GONUTS page