GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

CHICK:Q90X15

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Gallus gallus (Chicken). (9031)
Gene Name(s) Id1 (ECO:0000313 with EMBL:AAK93834.1)
Protein Name(s) Helix-loop-helix protein (ECO:0000313 with EMBL:AAK93834.1)
External Links
UniProt Q90X15
EMBL AY040527
RefSeq NP_989921.1
UniGene Gga.892
ProteinModelPortal Q90X15
STRING 9031.ENSGALP00000010011
PaxDb Q90X15
GeneID 395282
KEGG gga:395282
CTD 3397
eggNOG NOG77422
HOGENOM HOG000234788
HOVERGEN HBG009009
KO K04680
Reactome REACT_208309
NextBio 20815370
PRO PR:Q90X15
ExpressionAtlas Q90X15
GO GO:0005794
GO:0005634
GO:0003700
GO:0030509
GO:0060317
GO:0032963
GO:0001886
GO:0060425
GO:0060426
GO:0043066
GO:0043392
GO:0045668
GO:0043433
GO:0000122
GO:0031648
GO:0045765
GO:0043408
GO:0046677
GO:0006351
Gene3D 4.10.280.10
InterPro IPR011598
IPR026052
PANTHER PTHR11723
Pfam PF00010
SMART SM00353
SUPFAM SSF47459
PROSITE PS50888

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0045665

negative regulation of neuron differentiation

PMID:17681138[1]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010628

positive regulation of gene expression

PMID:17681138[1]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0060317

cardiac epithelial to mesenchymal transition

PMID:17250821[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051726

regulation of cell cycle

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000919548
RGD:2860

P

Seeded From UniProt

complete

involved_in

GO:0045665

negative regulation of neuron differentiation

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:96397
MGI:MGI:99414
PANTHER:PTN000919548
UniProtKB:O73933
UniProtKB:Q90X14
UniProtKB:Q90X15

P

Seeded From UniProt

complete

involved_in

GO:0043392

negative regulation of DNA binding

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0000575
MGI:MGI:96396
MGI:MGI:96397
PANTHER:PTN000919548

P

Seeded From UniProt

complete

involved_in

GO:0030182

neuron differentiation

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000919548
RGD:2858
RGD:2859
RGD:2860

P

Seeded From UniProt

complete

enables

GO:0008134

transcription factor binding

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:96398
PANTHER:PTN000919548
RGD:2858

F

Seeded From UniProt

complete

involved_in

GO:0007623

circadian rhythm

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:96396
MGI:MGI:96397
MGI:MGI:96398
MGI:MGI:99414
PANTHER:PTN000919548

P

Seeded From UniProt

complete

colocalizes_with

GO:0005737

cytoplasm

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:96396
MGI:MGI:96397
MGI:MGI:96398
MGI:MGI:99414
PANTHER:PTN000919548
RGD:2859
UniProtKB:Q02363

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0000575
MGI:MGI:96396
MGI:MGI:96397
MGI:MGI:96398
MGI:MGI:99414
PANTHER:PTN000919548
RGD:2858
RGD:2859
RGD:2860
UniProtKB:O73933
UniProtKB:P47928
UniProtKB:Q02363

C

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:96396
MGI:MGI:96398
PANTHER:PTN000919548

F

Seeded From UniProt

complete

enables

GO:0001085

RNA polymerase II transcription factor binding

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:99414
PANTHER:PTN000919548

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR026052

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR026052

C

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR026052

P

Seeded From UniProt

complete

enables

GO:0046983

protein dimerization activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR011598
InterPro:IPR036638

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Bai, G et al. (2007) Id sustains Hes1 expression to inhibit precocious neurogenesis by releasing negative autoregulation of Hes1. Dev. Cell 13 283-97 PubMed GONUTS page
  2. Mercado-Pimentel, ME et al. (2007) Endoglin and Alk5 regulate epithelial-mesenchymal transformation during cardiac valve formation. Dev. Biol. 304 420-32 PubMed GONUTS page
  3. 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page