GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

CHICK:Q5ZME1

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Gallus gallus (Chicken). (9031)
Gene Name(s) HNRNPA2B1 (ECO:0000313 with Ensembl:ENSGALP00000017954)
Protein Name(s) Uncharacterized protein (ECO:0000313 with EMBL:CAG31102.1, ECO:0000313 with Ensembl:ENSGALP00000017954)
External Links
UniProt Q5ZME1
EMBL AADN03002886
AJ719443
RefSeq NP_001026156.1
UniGene Gga.22131
SMR Q5ZME1
IntAct Q5ZME1
STRING 9031.ENSGALP00000017954
Ensembl ENSGALT00000017975
GeneID 420627
KEGG gga:420627
CTD 3181
eggNOG COG0724
GeneTree ENSGT00760000118873
HOGENOM HOG000234442
HOVERGEN HBG002295
KO K13158
OMA ESDWREK
OrthoDB EOG715Q6V
PhylomeDB Q5ZME1
TreeFam TF351342
Reactome REACT_242586
NextBio 20823513
PRO PR:Q5ZME1
Proteomes UP000000539
GO GO:0071013
GO:0016020
GO:0000166
GO:0044822
GO:0097157
GO:0043047
GO:0006397
GO:0048025
GO:0000122
GO:0050658
Gene3D 3.30.70.330
InterPro IPR012677
IPR000504
Pfam PF00076
SMART SM00360
PROSITE PS50102

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

part_of

GO:1990904

ribonucleoprotein complex

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0001215
FB:FBgn0004237
FB:FBgn0004838
MGI:MGI:1916394
PANTHER:PTN002689974
UniProtKB:P09651
UniProtKB:P19338
UniProtKB:P22626
UniProtKB:Q14103
UniProtKB:Q96EP5
UniProtKB:Q99729

C

Seeded From UniProt

complete

enables

GO:0003730

mRNA 3'-UTR binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN002690599
RGD:1310403
UniProtKB:P22626

F

Seeded From UniProt

complete

enables

GO:0003729

mRNA binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN002690576
RGD:69234
RGD:727807
UniProtKB:F4JFN7
UniProtKB:Q8W569
UniProtKB:Q9LHL2

F

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:104819
MGI:MGI:1330294
MGI:MGI:893588
MGI:MGI:97286
PANTHER:PTN002689974
RGD:1306751
RGD:1310403
RGD:1310906
RGD:3153
RGD:69234
SGD:S000003391
SGD:S000005483
TAIR:locus:2019622
TAIR:locus:2076096
TAIR:locus:2079874
TAIR:locus:2083810
TAIR:locus:2122009
TAIR:locus:2159401
TAIR:locus:2179939
UniProtKB:P19338
UniProtKB:P22626
UniProtKB:P38159
UniProtKB:P62995
UniProtKB:Q03250
UniProtKB:Q13148
UniProtKB:Q14103
UniProtKB:Q9SVM8

F

Seeded From UniProt

complete

involved_in

GO:0000398

mRNA splicing, via spliceosome

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN002690599
UniProtKB:P22626

P

Seeded From UniProt

complete

enables

GO:0097157

pre-mRNA intronic binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88569
ensembl:ENSMUSP00000087453

F

Seeded From UniProt

complete

involved_in

GO:0048025

negative regulation of mRNA splicing, via spliceosome

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88569
ensembl:ENSMUSP00000087453

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88569
ensembl:ENSMUSP00000087453

C

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88569
ensembl:ENSMUSP00000087453

F

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O88569
ensembl:ENSMUSP00000087453

P

Seeded From UniProt

complete

part_of

GO:1990904

ribonucleoprotein complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

C

Seeded From UniProt

complete

involved_in

GO:1990428

miRNA transport

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

P

Seeded From UniProt

complete

enables

GO:1990247

N6-methyladenosine-containing RNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

F

Seeded From UniProt

complete

part_of

GO:0071013

catalytic step 2 spliceosome

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

C

Seeded From UniProt

complete

part_of

GO:0070062

extracellular exosome

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

C

Seeded From UniProt

complete

involved_in

GO:0050658

RNA transport

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

P

Seeded From UniProt

complete

enables

GO:0043047

single-stranded telomeric DNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

F

Seeded From UniProt

complete

enables

GO:0035198

miRNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

F

Seeded From UniProt

complete

involved_in

GO:0031053

primary miRNA processing

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

P

Seeded From UniProt

complete

involved_in

GO:0006406

mRNA export from nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

P

Seeded From UniProt

complete

involved_in

GO:0006397

mRNA processing

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

C

Seeded From UniProt

complete

part_of

GO:0005681

spliceosomal complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

C

Seeded From UniProt

complete

enables

GO:0003730

mRNA 3'-UTR binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

F

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

F

Seeded From UniProt

complete

involved_in

GO:0000398

mRNA splicing, via spliceosome

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P22626
ensembl:ENSP00000346694

P

Seeded From UniProt

complete

enables

GO:0003676

nucleic acid binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000504
InterPro:IPR035979

F

Seeded From UniProt

complete

involved_in

GO:0006397

mRNA processing

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR034489

P

Seeded From UniProt

complete

involved_in

GO:0006406

mRNA export from nucleus

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR034489

P

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000038

ECO:0000323

imported automatically asserted information used in automatic assertion

UniProtKB-KW:KW-0694

F

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000414619

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 1.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page