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CHICK:PITX1

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Species (Taxon ID) Gallus gallus (Chicken). (9031)
Gene Name(s) PITX1 (synonyms: PTX1)
Protein Name(s) Pituitary homeobox 1

Homeobox protein PITX1 Paired-like homeodomain transcription factor 1 cPTX1

External Links
UniProt P56673
EMBL AF069397
UniGene Gga.962
ProteinModelPortal P56673
SMR P56673
PaxDb P56673
Ensembl ENSGALT00000009427
eggNOG NOG249113
GeneTree ENSGT00760000118908
HOGENOM HOG000273886
HOVERGEN HBG068770
InParanoid P56673
PhylomeDB P56673
PRO PR:P56673
Proteomes UP000000539
ExpressionAtlas P56673
GO GO:0005634
GO:0043565
GO:0003700
GO:0007275
GO:0006351
Gene3D 1.10.10.60
InterPro IPR017970
IPR001356
IPR016233
IPR009057
IPR003654
Pfam PF00046
PF03826
PIRSF PIRSF000563
SMART SM00389
SUPFAM SSF46689
PROSITE PS00027
PS50071
PS50803

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

enables

GO:0003700

DNA-binding transcription factor activity

PMID:23995701[1]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P78337

C

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:109340
PANTHER:PTN001551528
WB:WBGene00006766

F

Seeded From UniProt

complete

involved_in

GO:0009653

anatomical structure morphogenesis

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:109340
PANTHER:PTN001551528

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0020912
MGI:MGI:107374
MGI:MGI:109340
MGI:MGI:1100498
PANTHER:PTN001551528
RGD:3331
RGD:3332
UniProtKB:P78337
UniProtKB:Q99697
WB:WBGene00006766

C

Seeded From UniProt

complete

enables

GO:0001085

RNA polymerase II transcription factor binding

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001551528
UniProtKB:P78337
UniProtKB:Q99697

F

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:107374
MGI:MGI:1100498
PANTHER:PTN001551528
RGD:3331

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001356
InterPro:IPR009057

F

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR016233

F

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR017970

P

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR017970

F

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0217

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037
GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0371
UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Ibrahim, DM et al. (2013) Distinct global shifts in genomic binding profiles of limb malformation-associated HOXD13 mutations. Genome Res. 23 2091-102 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page