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CHICK:NFIB

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Species (Taxon ID) Gallus gallus (Chicken). (9031)
Gene Name(s) NFIB (synonyms: NFI-B)
Protein Name(s) Nuclear factor 1 B-type

NF1-B Nuclear factor 1/B CCAAT-box-binding transcription factor CTF Nuclear factor I/B NF-I/B NFI-B TGGCA-binding protein

External Links
UniProt P17924
EMBL X51485
X51484
PIR S09995
RefSeq NP_990603.1
UniGene Gga.709
STRING 9031.ENSGALP00000008721
PaxDb P17924
GeneID 396209
KEGG gga:396209
CTD 4781
eggNOG NOG252172
HOGENOM HOG000013028
HOVERGEN HBG006561
InParanoid P17924
KO K09169
OrthoDB EOG7WDN2K
PhylomeDB P17924
TreeFam TF313889
NextBio 20816261
PRO PR:P17924
Proteomes UP000000539
GO GO:0044300
GO:0005634
GO:0003677
GO:0000981
GO:0021960
GO:0002062
GO:0060486
GO:0071679
GO:0006260
GO:0010001
GO:0061141
GO:2000795
GO:2000791
GO:0045944
GO:0021740
GO:0006366
GO:0060509
GO:0060510
InterPro IPR000647
IPR020604
IPR019739
IPR019548
IPR003619
PANTHER PTHR11492
Pfam PF00859
PF03165
PF10524
SMART SM00523
PROSITE PS00349
PS51080

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:2000795

negative regulation of epithelial cell proliferation involved in lung morphogenesis

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P97863

P

Seeded From UniProt

complete

involved_in

GO:2000791

negative regulation of mesenchymal cell proliferation involved in lung development

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P97863

P

Seeded From UniProt

complete

involved_in

GO:0071679

commissural neuron axon guidance

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P97863

P

Seeded From UniProt

complete

involved_in

GO:0061141

lung ciliated cell differentiation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P97863

P

Seeded From UniProt

complete

involved_in

GO:0060510

type II pneumocyte differentiation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P97863

P

Seeded From UniProt

complete

involved_in

GO:0060509

type I pneumocyte differentiation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P97863

P

Seeded From UniProt

complete

involved_in

GO:0060486

Clara cell differentiation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P97863

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:O00712

P

Seeded From UniProt

complete

part_of

GO:0044300

cerebellar mossy fiber

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P97863

C

Seeded From UniProt

complete

involved_in

GO:0021960

anterior commissure morphogenesis

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P97863

P

Seeded From UniProt

complete

involved_in

GO:0021740

principal sensory nucleus of trigeminal nerve development

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P97863

P

Seeded From UniProt

complete

involved_in

GO:0010001

glial cell differentiation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P97863

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:O00712

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:O00712

F

Seeded From UniProt

complete

involved_in

GO:0002062

chondrocyte differentiation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P97863

P

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:O00712

F

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:103188
MGI:MGI:108056
MGI:MGI:109591
MGI:MGI:97311
PANTHER:PTN000896695
UniProtKB:O00712
UniProtKB:P08651
UniProtKB:Q12857
UniProtKB:Q14938
WB:WBGene00003592

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:103188
MGI:MGI:108056
PANTHER:PTN000896695
RGD:3170
RGD:62016
UniProtKB:O00712
UniProtKB:P08651
UniProtKB:Q12857

C

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000896695
UniProtKB:O00712

F

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:109591
MGI:MGI:97311
PANTHER:PTN000896695
UniProtKB:O00712
UniProtKB:P08651
UniProtKB:Q14938

P

Seeded From UniProt

complete

involved_in

GO:1902894

negative regulation of pri-miRNA transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O00712
ensembl:ENSP00000370340

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O00712
ensembl:ENSP00000370340

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O00712
ensembl:ENSP00000370340

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O00712
ensembl:ENSP00000370340

F

Seeded From UniProt

complete

part_of

GO:0001650

fibrillar center

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O00712
ensembl:ENSP00000370340

C

Seeded From UniProt

complete

enables

GO:0001228

DNA-binding transcription activator activity, RNA polymerase II-specific

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O00712
ensembl:ENSP00000370340

F

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O00712
ensembl:ENSP00000370340

F

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O00712
ensembl:ENSP00000370340

F

Seeded From UniProt

complete

involved_in

GO:2000795

negative regulation of epithelial cell proliferation involved in lung morphogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:2000791

negative regulation of mesenchymal cell proliferation involved in lung development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0071679

commissural neuron axon guidance

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0061141

lung ciliated cell differentiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0060689

cell differentiation involved in salivary gland development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0060662

salivary gland cavitation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0060510

type II pneumocyte differentiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0060509

type I pneumocyte differentiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0060486

Clara cell differentiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

part_of

GO:0044300

cerebellar mossy fiber

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

C

Seeded From UniProt

complete

involved_in

GO:0030902

hindbrain development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0030900

forebrain development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0030324

lung development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0021960

anterior commissure morphogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0021740

principal sensory nucleus of trigeminal nerve development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0010001

glial cell differentiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0009617

response to bacterium

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

involved_in

GO:0008285

negative regulation of cell population proliferation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

C

Seeded From UniProt

complete

involved_in

GO:0002062

chondrocyte differentiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

P

Seeded From UniProt

complete

enables

GO:0001228

DNA-binding transcription activator activity, RNA polymerase II-specific

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P97863
ensembl:ENSMUSP00000052863

F

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000647
InterPro:IPR020604

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000647
InterPro:IPR020604

C

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000647
InterPro:IPR003619
InterPro:IPR020604

P

Seeded From UniProt

complete

involved_in

GO:0006260

DNA replication

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0235

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page