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CHICK:KDM5B

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Species (Taxon ID) Gallus gallus (Chicken). (9031)
Gene Name(s) KDM5B (synonyms: JARID1B)
Protein Name(s) Lysine-specific demethylase 5B

Histone demethylase JARID1B Jumonji/ARID domain-containing protein 1B

External Links
UniProt Q5F3R2
EMBL AJ851588
RefSeq NP_001026200.1
UniGene Gga.7752
ProteinModelPortal Q5F3R2
SMR Q5F3R2
STRING 9031.ENSGALP00000040038
PaxDb Q5F3R2
GeneID 421168
KEGG gga:421168
CTD 10765
eggNOG NOG327026
HOGENOM HOG000290719
InParanoid Q5F3R2
KO K11446
PhylomeDB Q5F3R2
NextBio 20823981
PRO PR:Q5F3R2
Proteomes UP000000539
GO GO:0005634
GO:0003677
GO:0034648
GO:0034647
GO:0016706
GO:0008270
GO:0034720
GO:0034721
GO:0006355
GO:0048511
GO:0006351
Gene3D 1.10.150.60
3.30.40.10
InterPro IPR001606
IPR003347
IPR003349
IPR013637
IPR019786
IPR004198
IPR011011
IPR001965
IPR019787
IPR013083
Pfam PF01388
PF02373
PF02375
PF00628
PF08429
PF02928
SMART SM00501
SM00558
SM00545
SM00249
SUPFAM SSF46774
SSF57903
PROSITE PS51011
PS51184
PS51183
PS01359
PS50016

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

enables

GO:0008270

zinc ion binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9UGL1

F

Seeded From UniProt

complete

enables

GO:0042393

histone binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9UGL1

F

Seeded From UniProt

complete

enables

GO:0032453

histone demethylase activity (H3-K4 specific)

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9UGL1

F

Seeded From UniProt

complete

involved_in

GO:0034720

histone H3-K4 demethylation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9UGL1

P

Seeded From UniProt

complete

enables

GO:0034648

histone demethylase activity (H3-dimethyl-K4 specific)

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9UGL1

F

Seeded From UniProt

complete

enables

GO:0034647

histone demethylase activity (H3-trimethyl-K4 specific)

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9UGL1

F

Seeded From UniProt

complete

part_of

GO:0035097

histone methyltransferase complex

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:104813
PANTHER:PTN000075014

C

Seeded From UniProt

complete

enables

GO:0034647

histone demethylase activity (H3-trimethyl-K4 specific)

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0031759
PANTHER:PTN000075015
PomBase:SPAC1002.05c
PomBase:SPBP19A11.06
TAIR:locus:2044697
UniProtKB:P29375
UniProtKB:Q9UGL1
WB:WBGene00004319

F

Seeded From UniProt

complete

enables

GO:0032452

histone demethylase activity

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0031759
FB:FBgn0033233
FB:FBgn0053182
MGI:MGI:1922855
MGI:MGI:1924054
MGI:MGI:2442355
MGI:MGI:2446210
MGI:MGI:3606484
PANTHER:PTN000075014
PomBase:SPAC1002.05c
PomBase:SPBP19A11.06
SGD:S000000971
SGD:S000002503
SGD:S000003880
TAIR:locus:2044697
TAIR:locus:2128659
TAIR:locus:2196979
UniProtKB:B2RXH2
UniProtKB:C8VTU6
UniProtKB:O75164
UniProtKB:O94953
UniProtKB:P29375
UniProtKB:P41229
UniProtKB:Q10RP4
UniProtKB:Q336N8
UniProtKB:Q53WJ1
UniProtKB:Q5N712
UniProtKB:Q6B0I6
UniProtKB:Q9BY66
UniProtKB:Q9H3R0
UniProtKB:Q9UGL1
WB:WBGene00004319
WB:WBGene00012982

F

Seeded From UniProt

complete

involved_in

GO:0006338

chromatin remodeling

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000075014
PomBase:SPAC1002.05c
PomBase:SPAC343.11c
PomBase:SPBP19A11.06

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0031759
FB:FBgn0033233
FB:FBgn0036004
FB:FBgn0053182
MGI:MGI:104813
MGI:MGI:2136980
MGI:MGI:3606484
MGI:MGI:99781
PANTHER:PTN000075014
PomBase:SPBP19A11.06
RGD:1306378
RGD:1588576
SGD:S000002503
TAIR:locus:2128659
TAIR:locus:2146653
TAIR:locus:504955644
UniProtKB:B2RXH2
UniProtKB:O75164
UniProtKB:O94953
UniProtKB:P29375
UniProtKB:P41229
UniProtKB:Q53WJ1
UniProtKB:Q5N712
UniProtKB:Q92833
UniProtKB:Q9UGL1
WB:WBGene00004319

C

Seeded From UniProt

complete

involved_in

GO:0034721

histone H3-K4 demethylation, trimethyl-H3-K4-specific

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0034647

P

Seeded From UniProt

complete

involved_in

GO:0034721

histone H3-K4 demethylation, trimethyl-H3-K4-specific

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0034647

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001606
InterPro:IPR036431

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

involved_in

GO:0006325

chromatin organization

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0156

P

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

involved_in

GO:0048511

rhythmic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0090

P

Seeded From UniProt

complete

enables

GO:0016491

oxidoreductase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0560

F

Seeded From UniProt

complete

involved_in

GO:0055114

oxidation-reduction process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0560

P

Seeded From UniProt

complete

enables

GO:0051213

dioxygenase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0223

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 1.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page