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CHICK:KDM5B
Contents
Species (Taxon ID) | Gallus gallus (Chicken). (9031) | |
Gene Name(s) | KDM5B (synonyms: JARID1B) | |
Protein Name(s) | Lysine-specific demethylase 5B
Histone demethylase JARID1B Jumonji/ARID domain-containing protein 1B | |
External Links | ||
UniProt | Q5F3R2 | |
EMBL | AJ851588 | |
RefSeq | NP_001026200.1 | |
UniGene | Gga.7752 | |
ProteinModelPortal | Q5F3R2 | |
SMR | Q5F3R2 | |
STRING | 9031.ENSGALP00000040038 | |
PaxDb | Q5F3R2 | |
GeneID | 421168 | |
KEGG | gga:421168 | |
CTD | 10765 | |
eggNOG | NOG327026 | |
HOGENOM | HOG000290719 | |
InParanoid | Q5F3R2 | |
KO | K11446 | |
PhylomeDB | Q5F3R2 | |
NextBio | 20823981 | |
PRO | PR:Q5F3R2 | |
Proteomes | UP000000539 | |
GO | GO:0005634 GO:0003677 GO:0034648 GO:0034647 GO:0016706 GO:0008270 GO:0034720 GO:0034721 GO:0006355 GO:0048511 GO:0006351 | |
Gene3D | 1.10.150.60 3.30.40.10 | |
InterPro | IPR001606 IPR003347 IPR003349 IPR013637 IPR019786 IPR004198 IPR011011 IPR001965 IPR019787 IPR013083 | |
Pfam | PF01388 PF02373 PF02375 PF00628 PF08429 PF02928 | |
SMART | SM00501 SM00558 SM00545 SM00249 | |
SUPFAM | SSF46774 SSF57903 | |
PROSITE | PS51011 PS51184 PS51183 PS01359 PS50016 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
enables |
GO:0008270 |
zinc ion binding |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042393 |
histone binding |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0032453 |
histone demethylase activity (H3-K4 specific) |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0034720 |
histone H3-K4 demethylation |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0034648 |
histone demethylase activity (H3-dimethyl-K4 specific) |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0034647 |
histone demethylase activity (H3-trimethyl-K4 specific) |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0035097 |
histone methyltransferase complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:104813 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0034647 |
histone demethylase activity (H3-trimethyl-K4 specific) |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0031759 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0032452 |
histone demethylase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0031759 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006338 |
chromatin remodeling |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000075014 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0031759 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0034721 |
histone H3-K4 demethylation, trimethyl-H3-K4-specific |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0034647 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0034721 |
histone H3-K4 demethylation, trimethyl-H3-K4-specific |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0034647 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006325 |
chromatin organization |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0048511 |
rhythmic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0016491 |
oxidoreductase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0055114 |
oxidation-reduction process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0051213 |
dioxygenase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
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