GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
CHICK:H32
Contents
Species (Taxon ID) | Gallus gallus (Chicken). (9031) | |
Gene Name(s) | H3-VIII | |
Protein Name(s) | Histone H3.2
Histone H3 class I | |
External Links | ||
UniProt | P84229 | |
EMBL | X02218 J00869 M61154 M61155 X62291 X62292 U37577 U37578 U37579 | |
PIR | S18716 | |
RefSeq | NP_001268409.1 NP_001268438.1 XP_001232833.1 XP_001233028.1 XP_004937729.1 XP_416193.2 | |
UniGene | Gga.5274 | |
PDB | 1EQZ 1HIO 1HQ3 1TZY 2ARO 2HIO 3C9K | |
PDBsum | 1EQZ 1HIO 1HQ3 1TZY 2ARO 2HIO 3C9K | |
ProteinModelPortal | P84229 | |
SMR | P84229 | |
IntAct | P84229 | |
STRING | 9031.ENSGALP00000037310 | |
PaxDb | P84229 | |
PRIDE | P84229 | |
Ensembl | ENSGALT00000042655 ENSGALT00000043934 | |
GeneID | 100858681 417953 768333 769809 769852 770022 | |
KEGG | gga:100858681 gga:417953 gga:768333 gga:769809 gga:769852 gga:770022 | |
eggNOG | COG2036 | |
GeneTree | ENSGT00760000118967 | |
HOGENOM | HOG000155290 | |
HOVERGEN | HBG001172 | |
InParanoid | P84229 | |
KO | K11253 | |
OMA | SSATHQK | |
PhylomeDB | P84229 | |
TreeFam | TF314241 | |
Reactome | REACT_276260 REACT_277792 REACT_286472 REACT_299305 REACT_316866 REACT_316940 REACT_322027 REACT_340836 REACT_342239 REACT_348443 | |
EvolutionaryTrace | P84229 | |
NextBio | 20821179 | |
PRO | PR:P84229 | |
Proteomes | UP000000539 | |
GO | GO:0000786 GO:0005634 GO:0003677 | |
Gene3D | 1.10.20.10 | |
InterPro | IPR009072 IPR007125 IPR000164 | |
PANTHER | PTHR11426 | |
Pfam | PF00125 | |
PRINTS | PR00622 | |
SMART | SM00428 | |
SUPFAM | SSF47113 | |
PROSITE | PS00322 PS00959 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
enables |
GO:0031492 |
nucleosomal DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000152096 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000152096 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0000786 |
nucleosome |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0004828 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P84228 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003682 |
chromatin binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P84228 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0000785 |
chromatin |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P84228 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P84228 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0000786 |
nucleosome |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0046982 |
protein heterodimerization activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005694 |
chromosome |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0000786 |
nucleosome |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page