GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

CHICK:DNLI4

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Gallus gallus (Chicken). (9031)
Gene Name(s) LIG4
Protein Name(s) DNA ligase 4

DNA ligase IV Polydeoxyribonucleotide synthase [ATP] 4

External Links
UniProt Q90YB1
EMBL AB058600
AJ720061
RefSeq NP_001025987.1
UniGene Gga.1352
ProteinModelPortal Q90YB1
SMR Q90YB1
STRING 9031.ENSGALP00000027179
PaxDb Q90YB1
PRIDE Q90YB1
GeneID 418764
KEGG gga:418764
CTD 3981
eggNOG COG1793
HOGENOM HOG000007831
HOVERGEN HBG005516
InParanoid Q90YB1
KO K10777
PhylomeDB Q90YB1
Reactome REACT_115694
NextBio 20821908
PRO PR:Q90YB1
Proteomes UP000000539
GO GO:0070419
GO:0005654
GO:0005524
GO:0003677
GO:0003910
GO:0046872
GO:0007049
GO:0051301
GO:0071897
GO:0051103
GO:0006310
GO:0006281
GO:0006260
GO:0006302
GO:0006303
Gene3D 1.10.3260.10
2.40.50.140
3.40.50.10190
InterPro IPR001357
IPR000977
IPR012309
IPR012310
IPR016059
IPR012308
IPR021536
IPR029710
IPR012340
PANTHER PTHR10459:SF7
Pfam PF00533
PF04679
PF01068
PF04675
PF11411
SMART SM00292
SUPFAM SSF117018
SSF50249
SSF52113
TIGRFAMs TIGR00574
PROSITE PS50172
PS00697
PS00333
PS50160

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

part_of

GO:0070419

nonhomologous end joining complex

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P49917

C

Seeded From UniProt

complete

involved_in

GO:0033152

immunoglobulin V(D)J recombination

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1335098
PANTHER:PTN000048705

P

Seeded From UniProt

complete

part_of

GO:0032807

DNA ligase IV complex

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000048698
PomBase:SPCC1183.05c
SGD:S000005531
UniProtKB:P49917

C

Seeded From UniProt

complete

involved_in

GO:0006303

double-strand break repair via nonhomologous end joining

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0030506
MGI:MGI:1335098
PANTHER:PTN000048698
SGD:S000005531
TAIR:locus:2175544
UniProtKB:P49917

P

Seeded From UniProt

complete

involved_in

GO:0006297

nucleotide-excision repair, DNA gap filling

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000048698
UniProtKB:P49917

P

Seeded From UniProt

complete

part_of

GO:0005958

DNA-dependent protein kinase-DNA ligase 4 complex

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1335098
PANTHER:PTN000825456
UniProtKB:P49917

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR012308
InterPro:IPR029710
InterPro:IPR036599

F

Seeded From UniProt

complete

enables

GO:0003909

DNA ligase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR016059

F

Seeded From UniProt

complete

enables

GO:0003910

DNA ligase (ATP) activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000977
InterPro:IPR012308
InterPro:IPR012309
InterPro:IPR012310
InterPro:IPR021536
InterPro:IPR029710
InterPro:IPR036599

F

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000977
InterPro:IPR012310
InterPro:IPR029710

F

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000977
InterPro:IPR012308
InterPro:IPR012309
InterPro:IPR012310
InterPro:IPR029710
InterPro:IPR036599

P

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000977
InterPro:IPR012308
InterPro:IPR012309
InterPro:IPR012310
InterPro:IPR036599

P

Seeded From UniProt

complete

involved_in

GO:0051103

DNA ligation involved in DNA repair

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR016059
InterPro:IPR029710

P

Seeded From UniProt

complete

involved_in

GO:0071897

DNA biosynthetic process

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000977

P

Seeded From UniProt

complete

enables

GO:0003910

DNA ligase (ATP) activity

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:6.5.1.1

F

Seeded From UniProt

complete

involved_in

GO:0006303

double-strand break repair via nonhomologous end joining

Reactome:R-GGA-353423

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

Reactome:R-GGA-353298

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0006260

DNA replication

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0235

P

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0233

P

Seeded From UniProt

complete

enables

GO:0016874

ligase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0436

F

Seeded From UniProt

complete

involved_in

GO:0007049

cell cycle

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0131

P

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0067

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0227

P

Seeded From UniProt

complete

enables

GO:0000166

nucleotide binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0547

F

Seeded From UniProt

complete

involved_in

GO:0051301

cell division

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0132

P

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0234

P

Seeded From UniProt

complete

edit table

Notes

References

See Help:References for how to manage references in GONUTS.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
Retrieved from "https://gowiki.tamu.edu/wiki/index.php?title=CHICK:DNLI4&oldid=5925838"