CHICK:CLP1

Species (Taxon ID)	Gallus gallus (Chicken). (9031)
Gene Name(s)	CLP1 (ECO:0000255 with HAMAP-Rule:MF_03035)
Protein Name(s)	Polyribonucleotide 5'-hydroxyl-kinase Clp1 (ECO:0000255 with HAMAP-Rule:MF_03035) Polyadenylation factor Clp1 (ECO:0000255 with HAMAP-Rule:MF_03035) Polynucleotide kinase Clp1 (ECO:0000255 with HAMAP-Rule:MF_03035) Pre-mRNA cleavage complex II protein Clp1 (ECO:0000255 with HAMAP-Rule:MF_03035)
External Links
UniProt	Q5ZJL4
EMBL	AADN03004636 AJ720420
RefSeq	NP_001012292.1
UniGene	Gga.2011
STRING	9031.ENSGALP00000011907
PaxDb	Q5ZJL4
Ensembl	ENSGALT00000011921
GeneID	423131
KEGG	gga:423131
CTD	10978
eggNOG	COG5623
GeneTree	ENSGT00390000000344
HOGENOM	HOG000231935
InParanoid	Q5ZJL4
KO	K14399
OMA	FGSELNR
Reactome	REACT_242586 REACT_260474
NextBio	20825645
PRO	PR:Q5ZJL4
Proteomes	UP000000539
GO	GO:0005849 GO:0000214 GO:0005524 GO:0046404 GO:0051736 GO:0051733 GO:0021695 GO:0031124 GO:0035087 GO:0030423 GO:0006388
Gene3D	3.40.50.300
HAMAP	MF_03035
InterPro	IPR028606 IPR029007 IPR027417 IPR010655
Pfam	PF06807 PF03205
SUPFAM	SSF52540

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
enables	GO:0051736	ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q92989	F	Seeded From UniProt	complete
enables	GO:0051733	polydeoxyribonucleotide kinase activity	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q92989	F	Seeded From UniProt	complete
involved_in	GO:0035087	siRNA loading onto RISC involved in RNA interference	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q92989	P	Seeded From UniProt	complete
involved_in	GO:0030423	targeting of mRNA for destruction involved in RNA interference	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q92989	P	Seeded From UniProt	complete
involved_in	GO:0021695	cerebellar cortex development	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q92989	P	Seeded From UniProt	complete
involved_in	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q92989	P	Seeded From UniProt	complete
part_of	GO:0000214	tRNA-intron endonuclease complex	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q92989	C	Seeded From UniProt	complete
involved_in	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000298076 UniProtKB:Q92989	P	Seeded From UniProt	complete
involved_in	GO:0006378	mRNA polyadenylation	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000298076 SGD:S000005776	P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000978836 TAIR:locus:2084938 UniProtKB:Q582U0 UniProtKB:Q92989	C	Seeded From UniProt	complete
enables	GO:0051736	ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q92989 ensembl:ENSP00000434995	F	Seeded From UniProt	complete
enables	GO:0051733	polydeoxyribonucleotide kinase activity	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q92989 ensembl:ENSP00000434995	F	Seeded From UniProt	complete
involved_in	GO:0035087	siRNA loading onto RISC involved in RNA interference	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q92989 ensembl:ENSP00000434995	P	Seeded From UniProt	complete
involved_in	GO:0030423	targeting of mRNA for destruction involved in RNA interference	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q92989 ensembl:ENSP00000434995	P	Seeded From UniProt	complete
involved_in	GO:0021695	cerebellar cortex development	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q92989 ensembl:ENSP00000434995	P	Seeded From UniProt	complete
involved_in	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q92989 ensembl:ENSP00000434995	P	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q92989 ensembl:ENSP00000434995	C	Seeded From UniProt	complete
part_of	GO:0005654	nucleoplasm	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q92989 ensembl:ENSP00000434995	C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q92989 ensembl:ENSP00000434995	C	Seeded From UniProt	complete
part_of	GO:0000214	tRNA-intron endonuclease complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q92989 ensembl:ENSP00000434995	C	Seeded From UniProt	complete
involved_in	GO:0021695	cerebellar cortex development	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q99LI9 ensembl:ENSMUSP00000129300	P	Seeded From UniProt	complete
part_of	GO:0005849	mRNA cleavage factor complex	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR028606	C	Seeded From UniProt	complete
involved_in	GO:0031124	mRNA 3'-end processing	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR010655 InterPro:IPR028606	P	Seeded From UniProt	complete
enables	GO:0046404	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	GO_REF:0000003	ECO:0000501	evidence used in automatic assertion	EC:2.7.1.78	F	Seeded From UniProt	complete
enables	GO:0051734	ATP-dependent polynucleotide kinase activity	GO_REF:0000003	ECO:0000501	evidence used in automatic assertion	EC:2.7.1.78	F	Seeded From UniProt	complete
enables	GO:0051733	polydeoxyribonucleotide kinase activity	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000107275	F	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000107275	C	Seeded From UniProt	complete
part_of	GO:0005849	mRNA cleavage factor complex	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000107275	C	Seeded From UniProt	complete
involved_in	GO:0031124	mRNA 3'-end processing	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000107275	P	Seeded From UniProt	complete
involved_in	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000107275	P	Seeded From UniProt	complete
enables	GO:0051736	ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000107275	F	Seeded From UniProt	complete
part_of	GO:0000214	tRNA-intron endonuclease complex	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000107275	C	Seeded From UniProt	complete
enables	GO:0005524	ATP binding	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000107275	F	Seeded From UniProt	complete
involved_in	GO:0035087	siRNA loading onto RISC involved in RNA interference	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000107275	P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C	Seeded From UniProt	complete
enables	GO:0016301	kinase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0418	F	Seeded From UniProt	complete
enables	GO:0016740	transferase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0808	F	Seeded From UniProt	complete
involved_in	GO:0016310	phosphorylation	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0418	P	Seeded From UniProt	complete
enables	GO:0005524	ATP binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0067	F	Seeded From UniProt	complete
involved_in	GO:0006397	mRNA processing	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0507	P	Seeded From UniProt	complete
involved_in	GO:0008033	tRNA processing	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0819	P	Seeded From UniProt	complete
enables	GO:0000166	nucleotide binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0547	F	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:21873635-1] 1.0 ^1.1 ^1.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

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CHICK:CLP1

Contents

Annotations

Notes

References

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