GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
CANFA:RAB7A
Contents
Species (Taxon ID) | Canis familiaris (Dog) (Canis lupus familiaris). (9615) | |
Gene Name(s) | RAB7A (synonyms: RAB7) | |
Protein Name(s) | Ras-related protein Rab-7a | |
External Links | ||
UniProt | P18067 | |
EMBL | M35522 | |
PIR | B30413 | |
RefSeq | NP_001003316.1 XP_005632072.1 | |
UniGene | Cfa.29293 | |
ProteinModelPortal | P18067 | |
SMR | P18067 | |
IntAct | P18067 | |
MINT | MINT-8387239 | |
STRING | 9615.ENSCAFP00000034211 | |
BindingDB | P18067 | |
PaxDb | P18067 | |
PRIDE | P18067 | |
Ensembl | ENSCAFT00000038482 | |
GeneID | 404007 | |
KEGG | cfa:404007 | |
CTD | 7879 | |
eggNOG | COG1100 | |
GeneTree | ENSGT00760000119125 | |
HOGENOM | HOG000233968 | |
HOVERGEN | HBG009351 | |
InParanoid | P18067 | |
KO | K07897 | |
OMA | DYPDPIK | |
OrthoDB | EOG7G4QG8 | |
TreeFam | TF105605 | |
Reactome | REACT_221251 | |
NextBio | 20817494 | |
Proteomes | UP000002254 | |
GO | GO:0070062 GO:0005794 GO:0005770 GO:0005764 GO:0042470 GO:0045335 GO:0030670 GO:0019003 GO:0005525 GO:0045022 GO:0008333 GO:0007174 GO:0090383 GO:0090385 GO:0006622 GO:0007264 | |
Gene3D | 3.40.50.300 | |
InterPro | IPR027417 IPR005225 IPR001806 IPR003579 | |
Pfam | PF00071 | |
PRINTS | PR00449 | |
SMART | SM00175 | |
SUPFAM | SSF52540 | |
TIGRFAMs | TIGR00231 | |
PROSITE | PS51419 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0005525 |
GTP binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Figure1A: GTP overlay tested by SDS-page analysis showed that the Rab7 wild type isoform and the active mutant isoforms of the protein where able to bind to the radioactive GTP while the dominant negative mutant, Rab7T22N, (which had a reduced affinity to GTP) didn’t bind since no band was seen in the gel. Figure 1B: Western Blot analysis made with a monoclonal anti-Myc antibody showed the expression of the Myc-tagged Rab7 wild type protein as well.All this indicates that the Rab7 protein binds to GTP. |
complete | ||||
GO:0005097 |
Rab GTPase activator activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Figure 2 A: Mutated protein isoforms showed slower GTPase hydrolysis than the Rab7 wild type. |
complete | ||||
GO:0002057 |
guanine binding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Figure 2 B&C: The figures demonstrating the measurement of the GTPase activity of the His-tagged proteins show that the wild type Rab7 protein had a high affinity for guanine nucleotides specifically when GDP was added compared to the mutated Rab7 proteins associated with Charcot Marie Tooth Disease Type 2B |
complete | ||||
GO:0005515 |
protein binding |
ECO:0000021 |
physical interaction evidence |
|
F |
Figure. 4 : Using two hybrid assays ;the wild type of Rab7 and the CMT2B-associated Rab7 mutants were interacting strongly with RILP .Also Rab7 Q67L (which is an active mutated Rab7 protein impaired in GTP hydrolysis not GTP binding ) showed a strong interaction with RILP compared to the interaction of the dominant-negative mutant Rab7 T22N which was extremely weak . |
complete | |||
GO:0005770 |
late endosome |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
(Figure. 6M–X): When co-expressed with RILP,the Rab7 wild type, Rab7 Q67L and the CMT2B-associated Rab7 mutant proteins were present on the clustered endosomal structures. Which indicates that Rab7 not only interacts with RILP but it also colocalizes with RILP. |
complete | ||||
part_of |
GO:0070382 |
exocytic vesicle |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0098993 |
anchored component of synaptic vesicle membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0032419 |
extrinsic component of lysosome membrane |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0031902 |
late endosome membrane |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005811 |
lipid droplet |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0061724 |
lipophagy |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0090385 |
phagosome-lysosome fusion |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0090383 |
phagosome acidification |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0045335 |
phagocytic vesicle |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045022 |
early endosome to late endosome transport |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007174 |
epidermal growth factor catabolic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005770 |
late endosome |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0045335 |
phagocytic vesicle |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2442295 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0032482 |
Rab protein signal transduction |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0015790 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0008333 |
endosome to lysosome transport |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0015795 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006886 |
intracellular protein transport |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1914292 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005774 |
vacuolar membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000635769 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005770 |
late endosome |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0015795 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005770 |
late endosome |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0015795 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005764 |
lysosome |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2442295 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005764 |
lysosome |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2442295 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003924 |
GTPase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0015790 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090385 |
phagosome-lysosome fusion |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000635769 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005829 |
cytosol |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0045022 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005829 |
cytosol |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0045022 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000045 |
autophagosome assembly |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0061724 |
lipophagy |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51150 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0034045 |
phagophore assembly site membrane |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51150 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0032419 |
extrinsic component of lysosome membrane |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51150 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0031902 |
late endosome membrane |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51150 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005811 |
lipid droplet |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51150 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005794 |
Golgi apparatus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51150 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005770 |
late endosome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51150 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005768 |
endosome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51150 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51150 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:1905394 |
retromer complex binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:1903543 |
positive regulation of exosomal secretion |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:1903542 |
negative regulation of exosomal secretion |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090385 |
phagosome-lysosome fusion |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090383 |
phagosome acidification |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0048524 |
positive regulation of viral process |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045732 |
positive regulation of protein catabolic process |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0045335 |
phagocytic vesicle |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045022 |
early endosome to late endosome transport |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0042147 |
retrograde transport, endosome to Golgi |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0030904 |
retromer complex |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0022615 |
protein to membrane docking |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0019076 |
viral release from host cell |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0019003 |
GDP binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0010008 |
endosome membrane |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0008333 |
endosome to lysosome transport |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007174 |
epidermal growth factor catabolic process |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006622 |
protein targeting to lysosome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005770 |
late endosome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005764 |
lysosome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0005525 |
GTP binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003924 |
GTPase activity |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P51149 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005764 |
lysosome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:A0A158RFU6 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003924 |
GTPase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0005525 |
GTP binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0016042 |
lipid catabolic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005768 |
endosome |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0015031 |
protein transport |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006629 |
lipid metabolic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0005525 |
GTP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0031410 |
cytoplasmic vesicle |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005811 |
lipid droplet |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006914 |
autophagy |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005764 |
lysosome |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005765 |
lysosomal membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0031902 |
late endosome membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0010008 |
endosome membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0000421 |
autophagosome membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0033162 |
melanosome membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0030670 |
phagocytic vesicle membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 1.4 Spinosa, MR et al. (2008) Functional characterization of Rab7 mutant proteins associated with Charcot-Marie-Tooth type 2B disease. J. Neurosci. 28 1640-8 PubMed GONUTS page
- ↑ Cao, Z et al. (2008) Use of fluorescence-activated vesicle sorting for isolation of Naked2-associated, basolaterally targeted exocytic vesicles for proteomics analysis. Mol. Cell Proteomics 7 1651-67 PubMed GONUTS page
- ↑ Pavlos, NJ et al. (2010) Quantitative analysis of synaptic vesicle Rabs uncovers distinct yet overlapping roles for Rab3a and Rab27b in Ca2+-triggered exocytosis. J. Neurosci. 30 13441-53 PubMed GONUTS page
- ↑ Feng, Y et al. (1995) Rab 7: an important regulator of late endocytic membrane traffic. J. Cell Biol. 131 1435-52 PubMed GONUTS page
- ↑ Ceresa, BP & Bahr, SJ (2006) rab7 activity affects epidermal growth factor:epidermal growth factor receptor degradation by regulating endocytic trafficking from the late endosome. J. Biol. Chem. 281 1099-106 PubMed GONUTS page
- ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
c
e
g
l
o
p
- GO:0030670 ! phagocytic vesicle membrane
- GO:0045335 ! phagocytic vesicle
- GO:0034045 ! phagophore assembly site membrane
- GO:0090385 ! phagosome-lysosome fusion
- GO:0090383 ! phagosome acidification
- GO:0048524 ! positive regulation of viral process
- GO:1903543 ! positive regulation of exosomal secretion
- GO:0045732 ! positive regulation of protein catabolic process
- GO:0005515 ! protein binding
- GO:0006622 ! protein targeting to lysosome
- GO:0022615 ! protein to membrane docking
- GO:0015031 ! protein transport
r