CAEEL:D0VWM8

Species (Taxon ID)	Caenorhabditis elegans. (6239)
Gene Name(s)	No Information Provided.
Protein Name(s)	Protein TDP-1, isoform c (ECO:0000313 with EMBL:CBH29662.1)
External Links
UniProt	D0VWM8
EMBL	Z49910
RefSeq	NP_001254189.1
UniGene	Cel.15106
ProteinModelPortal	D0VWM8
SMR	D0VWM8
PaxDb	D0VWM8
EnsemblMetazoa	F44G4.4c
GeneID	174436
KEGG	cel:CELE_F44G4.4
CTD	174436
WormBase	F44G4.4c
eggNOG	NOG145464
GeneTree	ENSGT00730000110584
HOGENOM	HOG000016692
InParanoid	D0VWM8
OMA	KHNSSRQ
PRO	PR:D0VWM8
Proteomes	UP000001940
ExpressionAtlas	D0VWM8
GO	GO:0005634 GO:0000166 GO:0003727
Gene3D	3.30.70.330
InterPro	IPR012677 IPR000504
Pfam	PF00076
SMART	SM00360
PROSITE	PS50102

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Extension	Notes	Status
involved_in	GO:0006972	hyperosmotic response	PMID:22792076^[1]	ECO:0000270	expression pattern evidence used in manual assertion		P		Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:22792076^[1]	ECO:0000314	direct assay evidence used in manual assertion		C		Seeded From UniProt	complete
involved_in	GO:0006979	response to oxidative stress	PMID:22792076^[1]	ECO:0000270	expression pattern evidence used in manual assertion		P		Seeded From UniProt	complete
involved_in	GO:0010628	positive regulation of gene expression	PMID:22792076^[1]	ECO:0000316	genetic interaction evidence used in manual assertion	WB:WBGene00000898	P	has_regulation_target:(WB:WBGene00004932)	Seeded From UniProt	complete
involved_in	GO:0006972	hyperosmotic response	PMID:22792076^[1]	ECO:0000315	mutant phenotype evidence used in manual assertion		P		Seeded From UniProt	complete
involved_in	GO:0006979	response to oxidative stress	PMID:22792076^[1]	ECO:0000315	mutant phenotype evidence used in manual assertion		P		Seeded From UniProt	complete
involved_in	GO:0006979	response to oxidative stress	PMID:22792076^[1]	ECO:0000316	genetic interaction evidence used in manual assertion	WB:WBGene00000898	P		Seeded From UniProt	complete
involved_in	GO:0008340	determination of adult lifespan	PMID:22792076^[1]	ECO:0000315	mutant phenotype evidence used in manual assertion		P		Seeded From UniProt	complete
involved_in	GO:0008340	determination of adult lifespan	PMID:22792076^[1]	ECO:0000316	genetic interaction evidence used in manual assertion	WB:WBGene00000898	P		Seeded From UniProt	complete
enables	GO:0003727	single-stranded RNA binding	PMID:15826655^[2]	ECO:0000314	direct assay evidence used in manual assertion		F		Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:21611156^[3]	ECO:0007005	high throughput direct assay evidence used in manual assertion		C	part_of:(WBbt:0006804)	Seeded From UniProt	complete
part_of	GO:1990904	ribonucleoprotein complex	PMID:21873635^[4]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0001215 FB:FBgn0004237 FB:FBgn0004838 MGI:MGI:1916394 PANTHER:PTN002689974 UniProtKB:P09651 UniProtKB:P19338 UniProtKB:P22626 UniProtKB:Q14103 UniProtKB:Q96EP5 UniProtKB:Q99729	C		Seeded From UniProt	complete
involved_in	GO:0070935	3'-UTR-mediated mRNA stabilization	PMID:21873635^[4]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN002691014 UniProtKB:Q13148	P		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	PMID:21873635^[4]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN002691014 RGD:1310906	C		Seeded From UniProt	complete
part_of	GO:0005654	nucleoplasm	PMID:21873635^[4]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN002691014 UniProtKB:Q13148	C		Seeded From UniProt	complete
enables	GO:0003730	mRNA 3'-UTR binding	PMID:21873635^[4]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN002691014 UniProtKB:Q13148	F		Seeded From UniProt	complete
enables	GO:0003727	single-stranded RNA binding	PMID:21873635^[4]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN002691014 WB:WBGene00006514	F		Seeded From UniProt	complete
enables	GO:0003723	RNA binding	PMID:21873635^[4]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	MGI:MGI:104819 MGI:MGI:1330294 MGI:MGI:893588 MGI:MGI:97286 PANTHER:PTN002689974 RGD:1306751 RGD:1310403 RGD:1310906 RGD:3153 RGD:69234 SGD:S000003391 SGD:S000005483 TAIR:locus:2019622 TAIR:locus:2076096 TAIR:locus:2079874 TAIR:locus:2083810 TAIR:locus:2122009 TAIR:locus:2159401 TAIR:locus:2179939 UniProtKB:P19338 UniProtKB:P22626 UniProtKB:P38159 UniProtKB:P62995 UniProtKB:Q03250 UniProtKB:Q13148 UniProtKB:Q14103 UniProtKB:Q9SVM8	F		Seeded From UniProt	complete
enables	GO:0003690	double-stranded DNA binding	PMID:21873635^[4]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN002691014 UniProtKB:Q13148	F		Seeded From UniProt	complete
enables	GO:0003676	nucleic acid binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000504 InterPro:IPR035979	F		Seeded From UniProt	complete
involved_in	GO:0008380	RNA splicing	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0508	P		Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C		Seeded From UniProt	complete
involved_in	GO:0006397	mRNA processing	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0507	P		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0963 UniProtKB-SubCell:SL-0086	C		Seeded From UniProt	complete
edit table

Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 Vaccaro, A et al. (2012) TDP-1/TDP-43 regulates stress signaling and age-dependent proteotoxicity in Caenorhabditis elegans. PLoS Genet. 8 e1002806 PubMed GONUTS page
↑ Ayala, YM et al. (2005) Human, Drosophila, and C.elegans TDP43: nucleic acid binding properties and splicing regulatory function. J. Mol. Biol. 348 575-88 PubMed GONUTS page
↑ Meissner, B et al. (2011) Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. PLoS ONE 6 e19937 PubMed GONUTS page
↑ ^4.0 ^4.1 ^4.2 ^4.3 ^4.4 ^4.5 ^4.6 ^4.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:22792076-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 Vaccaro, A et al. (2012) TDP-1/TDP-43 regulates stress signaling and age-dependent proteotoxicity in Caenorhabditis elegans. PLoS Genet. 8 e1002806 PubMed GONUTS page

[PMID:15826655-2] Ayala, YM et al. (2005) Human, Drosophila, and C.elegans TDP43: nucleic acid binding properties and splicing regulatory function. J. Mol. Biol. 348 575-88 PubMed GONUTS page

[PMID:21611156-3] Meissner, B et al. (2011) Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. PLoS ONE 6 e19937 PubMed GONUTS page

[PMID:21873635-4] 4.0 ^4.1 ^4.2 ^4.3 ^4.4 ^4.5 ^4.6 ^4.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[1]

[2]

[3]

[4]

CAEEL:D0VWM8

Contents

Annotations

Notes

References

3

c

d

e

h

m

n

p

r

s

Navigation menu

Personal tools

Namespaces

Variants

Views

More

Search

Navigation

Cacao

Links

Tools