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BOVIN:OPSD
Contents
Species (Taxon ID) | Bos taurus (Bovine). (9913) | |
Gene Name(s) | RHO | |
Protein Name(s) | Rhodopsin | |
External Links | ||
UniProt | P02699 | |
EMBL | K00506 K00502 K00503 K00504 K00505 M21606 | |
PIR | A90840 | |
RefSeq | NP_001014890.1 | |
UniGene | Bt.12753 | |
PDB | 1BOJ 1BOK 1EDS 1EDV 1EDW 1EDX 1F88 1FDF 1GZM 1HZX 1JFP 1L9H 1LN6 1N3M 1NZS 1OV0 1OV1 1U19 1VQX 2G87 2HPY 2I35 2I36 2I37 2IQK 2J4Y 2PED 2X72 3C9L 3C9M 3CAP 3DQB 3OAX 3PQR 3PXO 4A4M 4BEY 4BEZ 4J4Q 4PXF | |
PDBsum | 1BOJ 1BOK 1EDS 1EDV 1EDW 1EDX 1F88 1FDF 1GZM 1HZX 1JFP 1L9H 1LN6 1N3M 1NZS 1OV0 1OV1 1U19 1VQX 2G87 2HPY 2I35 2I36 2I37 2IQK 2J4Y 2PED 2X72 3C9L 3C9M 3CAP 3DQB 3OAX 3PQR 3PXO 4A4M 4BEY 4BEZ 4J4Q 4PXF | |
DisProt | DP00271 | |
ProteinModelPortal | P02699 | |
SMR | P02699 | |
BioGrid | 166570 | |
DIP | DIP-29225N | |
IntAct | P02699 | |
MINT | MINT-1507462 | |
STRING | 9913.ENSBTAP00000001730 | |
BindingDB | P02699 | |
ChEMBL | CHEMBL5739 | |
UniCarbKB | P02699 | |
Ensembl | ENSBTAT00000001730 | |
GeneID | 509933 | |
KEGG | bta:509933 | |
CTD | 6010 | |
eggNOG | NOG311294 | |
GeneTree | ENSGT00760000118977 | |
HOGENOM | HOG000253932 | |
HOVERGEN | HBG107442 | |
InParanoid | P02699 | |
KO | K04250 | |
OMA | LAAYMFM | |
OrthoDB | EOG72NRQJ | |
TreeFam | TF324998 | |
Reactome | REACT_203536 REACT_209198 REACT_210568 REACT_211562 REACT_211834 | |
EvolutionaryTrace | P02699 | |
NextBio | 20869202 | |
Proteomes | UP000009136 | |
GO | GO:0005911 GO:0005794 GO:0005887 GO:0097381 GO:0060342 GO:0042622 GO:0005886 GO:0008020 GO:0005085 GO:0046872 GO:0071482 GO:0007603 GO:0043547 GO:0006468 GO:0018298 GO:0060041 GO:0007601 | |
Gene3D | 4.10.840.10 | |
InterPro | IPR000276 IPR017452 IPR001760 IPR027430 IPR000732 IPR019477 | |
Pfam | PF00001 PF10413 | |
PRINTS | PR00237 PR00238 PR00579 | |
PROSITE | PS00237 PS50262 PS00238 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
involved_in |
GO:0016038 |
absorption of visible light |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0005502 |
11-cis retinal binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0008020 |
G protein-coupled photoreceptor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0016056 |
rhodopsin mediated signaling pathway |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0097381 |
photoreceptor disc membrane |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0002046 |
opsin binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:1990763 |
arrestin family protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0016038 |
absorption of visible light |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0005502 |
11-cis retinal binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009416 |
response to light stimulus |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0019867 |
outer membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0008270 |
zinc ion binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0042622 |
photoreceptor outer segment membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0005502 |
11-cis retinal binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0005085 |
guanyl-nucleotide exchange factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0042622 |
photoreceptor outer segment membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0001965 |
G-protein alpha-subunit binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0097648 |
G protein-coupled receptor complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0016038 |
absorption of visible light |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007603 |
phototransduction, visible light |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0042622 |
photoreceptor outer segment membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0016038 |
absorption of visible light |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0008020 |
G protein-coupled photoreceptor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007603 |
phototransduction, visible light |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005887 |
integral component of plasma membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0060342 |
photoreceptor inner segment membrane |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0042622 |
photoreceptor outer segment membrane |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005886 |
plasma membrane |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0071482 |
cellular response to light stimulus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0002940 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0008020 |
G protein-coupled photoreceptor activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0002940 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007602 |
phototransduction |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0002940 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007186 |
G protein-coupled receptor signaling pathway |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000662115 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005887 |
integral component of plasma membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1929473 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0001750 |
photoreceptor outer segment |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1097692 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0097381 |
photoreceptor disc membrane |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08100 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0060342 |
photoreceptor inner segment membrane |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08100 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0042622 |
photoreceptor outer segment membrane |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08100 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007186 |
G protein-coupled receptor signaling pathway |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08100 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005886 |
plasma membrane |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08100 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005794 |
Golgi apparatus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08100 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0001917 |
photoreceptor inner segment |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08100 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0001750 |
photoreceptor outer segment |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08100 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0071482 |
cellular response to light stimulus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15409 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0060041 |
retina development in camera-type eye |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15409 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0050953 |
sensory perception of light stimulus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15409 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045494 |
photoreceptor cell maintenance |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15409 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0009583 |
detection of light stimulus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15409 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0009416 |
response to light stimulus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15409 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007602 |
phototransduction |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15409 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007601 |
visual perception |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15409 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006468 |
protein phosphorylation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15409 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005911 |
cell-cell junction |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15409 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0001917 |
photoreceptor inner segment |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15409 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0001750 |
photoreceptor outer segment |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15409 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0004930 |
G protein-coupled receptor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007186 |
G protein-coupled receptor signaling pathway |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007601 |
visual perception |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007602 |
phototransduction |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000276 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0050896 |
response to stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0009881 |
photoreceptor activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0042995 |
cell projection |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0018298 |
protein-chromophore linkage |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007601 |
visual perception |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007165 |
signal transduction |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0001750 |
photoreceptor outer segment |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0097381 |
photoreceptor disc membrane |
Reactome:R-BTA-74831 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
part_of |
GO:0000139 |
Golgi membrane |
Reactome:R-NUL-5623510 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007602 |
phototransduction |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0004930 |
G protein-coupled receptor activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007186 |
G protein-coupled receptor signaling pathway |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Singhal, A et al. (2016) Structural role of the T94I rhodopsin mutation in congenital stationary night blindness. EMBO Rep. 17 1431-1440 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Deupi, X et al. (2012) Stabilized G protein binding site in the structure of constitutively active metarhodopsin-II. Proc. Natl. Acad. Sci. U.S.A. 109 119-24 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 Han, M et al. (2001) Crystal structure of beta-arrestin at 1.9 A: possible mechanism of receptor binding and membrane Translocation. Structure 9 869-80 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Palczewski, K et al. (2000) Crystal structure of rhodopsin: A G protein-coupled receptor. Science 289 739-45 PubMed GONUTS page
- ↑ Natochin, M et al. (2000) AGS3 inhibits GDP dissociation from galpha subunits of the Gi family and rhodopsin-dependent activation of transducin. J. Biol. Chem. 275 40981-5 PubMed GONUTS page
- ↑ Batra-Safferling, R et al. (2006) Glutamic acid-rich proteins of rod photoreceptors are natively unfolded. J. Biol. Chem. 281 1449-60 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 7.3 7.4 Kisselev, OG et al. (1998) Light-activated rhodopsin induces structural binding motif in G protein alpha subunit. Proc. Natl. Acad. Sci. U.S.A. 95 4270-5 PubMed GONUTS page
- ↑ Sato, K et al. (2012) Comparative studies on the late bleaching processes of four kinds of cone visual pigments and rod visual pigment. Biochemistry 51 4300-8 PubMed GONUTS page
- ↑ 9.0 9.1 9.2 Sato, K et al. (2011) Vertebrate ancient-long opsin has molecular properties intermediate between those of vertebrate and invertebrate visual pigments. Biochemistry 50 10484-90 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 10.3 10.4 10.5 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Park, JH et al. (2008) Crystal structure of the ligand-free G-protein-coupled receptor opsin. Nature 454 183-7 PubMed GONUTS page
- ↑ Salom, D et al. (2006) Crystal structure of a photoactivated deprotonated intermediate of rhodopsin. Proc. Natl. Acad. Sci. U.S.A. 103 16123-8 PubMed GONUTS page
- ↑ Kota, P et al. (2006) Opsin is present as dimers in COS1 cells: identification of amino acids at the dimeric interface. Proc. Natl. Acad. Sci. U.S.A. 103 3054-9 PubMed GONUTS page
- ↑ Mansoor, SE et al. (2006) Rhodopsin self-associates in asolectin liposomes. Proc. Natl. Acad. Sci. U.S.A. 103 3060-5 PubMed GONUTS page
c
g
- GO:0001965 ! G-protein alpha-subunit binding
- GO:0005794 ! Golgi apparatus
- GO:0000139 ! Golgi membrane
- GO:0005085 ! guanyl-nucleotide exchange factor activity
- GO:0097648 ! G protein-coupled receptor complex
- GO:0004930 ! G protein-coupled receptor activity
- GO:0016056 ! G protein-coupled opsin signaling pathway
- GO:0008020 ! G protein-coupled photoreceptor activity
- GO:0007186 ! G protein-coupled receptor signaling pathway
i
o
p
- Pecora
- GO:0097381 ! photoreceptor disc membrane
- GO:0009881 ! photoreceptor activity
- GO:0001917 ! photoreceptor inner segment
- GO:0042622 ! photoreceptor outer segment membrane
- GO:0060342 ! photoreceptor inner segment membrane
- GO:0001750 ! photoreceptor outer segment
- GO:0045494 ! photoreceptor cell maintenance
- GO:0007602 ! phototransduction
- GO:0007603 ! phototransduction, visible light
- GO:0005886 ! plasma membrane
- GO:0006468 ! protein phosphorylation
r