GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

BACSU:YCIB

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Bacillus subtilis (strain 168). (224308)
Gene Name(s) yciB
Protein Name(s) Putative L,D-transpeptidase YciB
External Links
UniProt C0SP99
EMBL D50453
AL009126
PIR A69760
RefSeq NP_388217.2
WP_003246380.1
STRING 224308.Bsubs1_010100001868
TCDB 9.B.10.1.1
PaxDb C0SP99
EnsemblBacteria CAB12129
GeneID 938318
KEGG bsu:BSU03350
PATRIC 18972229
GenoList BSU03350
eggNOG COG1376
HOGENOM HOG000288930
InParanoid C0SP99
OMA CIRLTIP
OrthoDB EOG6BKJ78
PhylomeDB C0SP99
BioCyc BSUB:BSU03350-MONOMER
UniPathway UPA00219
Proteomes UP000001570
GO GO:0005886
GO:0016787
GO:0016757
GO:0071555
GO:0009252
GO:0008360
InterPro IPR005490
Pfam PF03734
PROSITE PS51257

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0051286

cell tip

PMID:20013255[1]

ECO:0000314

C

Figure 5A shows a flagged YciB being expressed in Bacillus subtilis and analyzed via immunofluorescence. The arrows within the figure are locating areas with a main concentration of Ycib-FLAG. These locations are near areas of division and cell poles.

complete
CACAO 11019

enables

GO:0071972

peptidoglycan L,D-transpeptidase activity

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG11253
EcoGene:EG12682
EcoGene:EG13324
EcoGene:EG13437
EcoGene:EG14015
PANTHER:PTN001255072

F

Seeded From UniProt

complete

involved_in

GO:0018104

peptidoglycan-protein cross-linking

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG12682
EcoGene:EG13324
EcoGene:EG13437
PANTHER:PTN001255072

P

Seeded From UniProt

complete

part_of

GO:0005576

extracellular region

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001255072
UniProtKB:O07436
UniProtKB:P9WKV3

C

Seeded From UniProt

complete

involved_in

GO:0006508

proteolysis

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0071972

P

Seeded From UniProt

complete

enables

GO:0016740

transferase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR005490

F

Seeded From UniProt

complete

enables

GO:0016757

transferase activity, transferring glycosyl groups

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0328

F

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

involved_in

GO:0008360

regulation of cell shape

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0133

P

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

involved_in

GO:0071555

cell wall organization

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0961

P

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1003
UniProtKB-SubCell:SL-0039

C

Seeded From UniProt

complete

involved_in

GO:0009252

peptidoglycan biosynthetic process

GO_REF:0000037
GO_REF:0000041

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0573
UniPathway:UPA00219

P

Seeded From UniProt

complete

enables

GO:0016740

transferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0808

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Bramkamp, M (2010) The putative Bacillus subtilis L,D-transpeptidase YciB is a lipoprotein that localizes to the cell poles in a divisome-dependent manner. Arch. Microbiol. 192 57-68 PubMed GONUTS page
  2. 2.0 2.1 2.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page