GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

BACSU:ROCA2

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Bacillus subtilis (strain 168). (224308)
Gene Name(s) putC (ECO:0000303 with PMID:22139509[1]) (synonyms: ycgN)
Protein Name(s) 1-pyrroline-5-carboxylate dehydrogenase 2 (ECO:0000305)

P5C dehydrogenase 2 (ECO:0000305) L-glutamate gamma-semialdehyde dehydrogenase (ECO:0000255 with HAMAP-Rule:MF_00733)

External Links
UniProt P94391
EMBL D50453
AL009126
PIR A69759
RefSeq NP_388203.2
WP_003234655.1
ProteinModelPortal P94391
SMR P94391
STRING 224308.BSU03210
jPOST P94391
PaxDb P94391
PRIDE P94391
EnsemblBacteria CAB12115
GeneID 938333
KEGG bsu:BSU03210
PATRIC fig|224308.179.peg.335
eggNOG ENOG4105C26
COG1012
HOGENOM HOG000271511
InParanoid P94391
KO K00294
OMA ADPHVPF
PhylomeDB P94391
BioCyc BSUB:BSU03210-MONOMER
UniPathway UPA00261
Proteomes UP000001570
GO GO:0009898
GO:0003842
GO:0016620
GO:0006537
GO:0010133
GO:0006560
CDD cd07124
Gene3D 3.40.309.10
3.40.605.10
HAMAP MF_00733
InterPro IPR016161
IPR016163
IPR016160
IPR029510
IPR016162
IPR015590
IPR005932
Pfam PF00171
SUPFAM SSF53720
TIGRFAMs TIGR01237
PROSITE PS00070
PS00687

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0010133

proline catabolic process to glutamate

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG10801
PANTHER:PTN000193023
SGD:S000001079
UniProtKB:Q9I5F6

P

Seeded From UniProt

part_of

GO:0009898

cytoplasmic side of plasma membrane

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG10801
PANTHER:PTN000193023

C

Seeded From UniProt

involved_in

GO:0006560

proline metabolic process

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG10801
FB:FBgn0037138
PANTHER:PTN000193023
SGD:S000001079
UniProtKB:P10503
UniProtKB:Q9I5F6

P

Seeded From UniProt

enables

GO:0003842

1-pyrroline-5-carboxylate dehydrogenase activity

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG10801
PANTHER:PTN000193023
SGD:S000001079
UniProtKB:Q9I5F6

F

Seeded From UniProt

enables

GO:0016491

oxidoreductase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR015590
InterPro:IPR016160
InterPro:IPR016161
InterPro:IPR016162
InterPro:IPR016163
InterPro:IPR029510

F

Seeded From UniProt

enables

GO:0016620

oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR016163

F

Seeded From UniProt

involved_in

GO:0055114

oxidation-reduction process

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR015590
InterPro:IPR016160
InterPro:IPR016161
InterPro:IPR016162
InterPro:IPR016163
InterPro:IPR029510

P

Seeded From UniProt

involved_in

GO:0006537

glutamate biosynthetic process

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000099061

P

Seeded From UniProt

enables

GO:0003842

1-pyrroline-5-carboxylate dehydrogenase activity

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000099061

F

Seeded From UniProt

involved_in

GO:0055114

oxidation-reduction process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0560

P

Seeded From UniProt

enables

GO:0016491

oxidoreductase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0560

F

Seeded From UniProt

GO:0004657

proline dehydrogenase activity

PMID:22139509[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Evidence for proline dehydrogenase is in the text, not a figure or table "The addition of L-proline to B. subtilis cultures grown in SMM increased PRODH activity 5-fold from 0.48 ± 0.05 U (mg protein−1) to 2.69 ± 0.21 U (mg protein−1). This increase in PRODH activity was abolished in a putB mutant that possessed an activity of 0.46 ± 0.02 U (mg protein−1) in cells grown in the absence of L-proline and 0.45 ± 0.02 U (mg protein−1) in cells cultivated in the presence of L-proline."

complete
CACAO 9945

involved_in

GO:0010133

proline catabolic process to glutamate

GO_REF:0000041

ECO:0000322

imported manually asserted information used in automatic assertion

UniPathway:UPA00261

P

Seeded From UniProt

involved_in

GO:0010133

proline catabolic process to glutamate

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG10801
PANTHER:PTN000193023
SGD:S000001079
UniProtKB:Q9I5F6

P

Seeded From UniProt

part_of

GO:0009898

cytoplasmic side of plasma membrane

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG10801
PANTHER:PTN000193023

C

Seeded From UniProt

involved_in

GO:0006560

proline metabolic process

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG10801
FB:FBgn0037138
PANTHER:PTN000193023
SGD:S000001079
UniProtKB:P10503
UniProtKB:Q9I5F6

P

Seeded From UniProt

enables

GO:0003842

1-pyrroline-5-carboxylate dehydrogenase activity

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG10801
PANTHER:PTN000193023
SGD:S000001079
UniProtKB:Q9I5F6

F

Seeded From UniProt

enables

GO:0016491

oxidoreductase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR015590
InterPro:IPR016160
InterPro:IPR016161
InterPro:IPR016162
InterPro:IPR016163
InterPro:IPR029510

F

Seeded From UniProt

enables

GO:0016620

oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR016163

F

Seeded From UniProt

involved_in

GO:0055114

oxidation-reduction process

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR015590
InterPro:IPR016160
InterPro:IPR016161
InterPro:IPR016162
InterPro:IPR016163
InterPro:IPR029510

P

Seeded From UniProt

involved_in

GO:0055114

oxidation-reduction process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0560

P

Seeded From UniProt

enables

GO:0016491

oxidoreductase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0560

F

Seeded From UniProt

involved_in

GO:0010133

proline catabolic process to glutamate

GO_REF:0000041

ECO:0000322

imported manually asserted information used in automatic assertion

UniPathway:UPA00261

P

Seeded From UniProt

involved_in

GO:0006537

glutamate biosynthetic process

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000099061

P

Seeded From UniProt

enables

GO:0003842

1-pyrroline-5-carboxylate dehydrogenase activity

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000099061

F

Seeded From UniProt


Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Moses, S et al. (2012) Proline utilization by Bacillus subtilis: uptake and catabolism. J. Bacteriol. 194 745-58 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page