ARATH:VDE

Species (Taxon ID)	Arabidopsis thaliana (Mouse-ear cress). (3702)
Gene Name(s)	VDE1 (synonyms: AVDE1, NPQ1, VXDE)
Protein Name(s)	Violaxanthin de-epoxidase, chloroplastic AtVxDE Protein NON-PHOTOCHEMICAL QUENCHING 1
External Links
UniProt	Q39249
EMBL	U44133 AC003981 AC006932 CP002684 CP002684 AY063067 AF370251
PIR	T00708
RefSeq	NP_001031000.1 NP_172331.1
UniGene	At.20930
PDB	3CQN 3CQR
PDBsum	3CQN 3CQR
ProteinModelPortal	Q39249
SMR	Q39249
IntAct	Q39249
PaxDb	Q39249
PRIDE	Q39249
EnsemblPlants	AT1G08550.1 AT1G08550.2
GeneID	837377
KEGG	ath:AT1G08550
TAIR	AT1G08550
eggNOG	NOG292386
HOGENOM	HOG000265603
InParanoid	Q39249
KO	K09839
OMA	DDWYIIS
PhylomeDB	Q39249
BioCyc	ARA:AT1G08550-MONOMER ARA:GQT-2385-MONOMER MetaCyc:AT1G08550-MONOMER
BRENDA	1.10.99.3
EvolutionaryTrace	Q39249
Proteomes	UP000006548
ExpressionAtlas	Q39249
Genevestigator	Q39249
GO	GO:0009507 GO:0009534 GO:0009535 GO:0031977 GO:0046422 GO:0015994 GO:0006631 GO:0009408 GO:0010028
Gene3D	2.40.128.20
InterPro	IPR012674 IPR011038 IPR022272 IPR010788
Pfam	PF07137
SUPFAM	SSF50814
PROSITE	PS00213

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
enables	GO:0019904	protein domain specific binding	PMID:24736607^[1]	ECO:0000353	physical interaction evidence used in manual assertion	UniProtKB:Q9SLF3	F	Seeded From UniProt	complete
enables	GO:0046422	violaxanthin de-epoxidase activity	PMID:10588066^[2]	ECO:0000315	mutant phenotype evidence used in manual assertion		F	Seeded From UniProt	complete
part_of	GO:0031977	thylakoid lumen	PMID:11719511^[3]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
involved_in	GO:0015994	chlorophyll metabolic process	PMID:16258032^[4]	ECO:0000316	genetic interaction evidence used in manual assertion	AGI_LocusCode:AT4G32770	P	Seeded From UniProt	complete
involved_in	GO:0010028	xanthophyll cycle	PMID:10588066^[2]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
part_of	GO:0009534	chloroplast thylakoid	PMID:20061580^[5]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
part_of	GO:0009507	chloroplast	PMID:18431481^[6]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
involved_in	GO:0009408	response to heat	PMID:15923322^[7]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0006631	fatty acid metabolic process	PMID:16258032^[4]	ECO:0000316	genetic interaction evidence used in manual assertion	AGI_LocusCode:AT4G32770	P	Seeded From UniProt	complete
part_of	GO:0009507	chloroplast	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR010788	C	Seeded From UniProt	complete
enables	GO:0046422	violaxanthin de-epoxidase activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR010788	F	Seeded From UniProt	complete
involved_in	GO:0055114	oxidation-reduction process	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR010788	P	Seeded From UniProt	complete
part_of	GO:0016020	membrane	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0472	C	Seeded From UniProt	complete
enables	GO:0016491	oxidoreductase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0560	F	Seeded From UniProt	complete
part_of	GO:0009536	plastid	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0934	C	Seeded From UniProt	complete
part_of	GO:0009579	thylakoid	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0793	C	Seeded From UniProt	complete
part_of	GO:0009507	chloroplast	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0150	C	Seeded From UniProt	complete
involved_in	GO:0055114	oxidation-reduction process	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0560	P	Seeded From UniProt	complete
part_of	GO:0009535	chloroplast thylakoid membrane	GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-SubCell:SL-0058	C	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ Dutta, S et al. (2014) A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. PLoS ONE 9 e95026 PubMed GONUTS page
↑ ^2.0 ^2.1 Frechilla, S et al. (1999) Stomata from npq1, a zeaxanthin-less Arabidopsis mutant, lack a specific response to blue light. Plant Cell Physiol. 40 949-54 PubMed GONUTS page
↑ Schubert, M et al. (2002) Proteome map of the chloroplast lumen of Arabidopsis thaliana. J. Biol. Chem. 277 8354-65 PubMed GONUTS page
↑ ^4.0 ^4.1 Havaux, M et al. (2005) Vitamin E protects against photoinhibition and photooxidative stress in Arabidopsis thaliana. Plant Cell 17 3451-69 PubMed GONUTS page
↑ Ferro, M et al. (2010) AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Mol. Cell Proteomics 9 1063-84 PubMed GONUTS page
↑ Zybailov, B et al. (2008) Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. PLoS ONE 3 e1994 PubMed GONUTS page
↑ Larkindale, J et al. (2005) Heat stress phenotypes of Arabidopsis mutants implicate multiple signaling pathways in the acquisition of thermotolerance. Plant Physiol. 138 882-97 PubMed GONUTS page

[PMID:24736607-1] Dutta, S et al. (2014) A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. PLoS ONE 9 e95026 PubMed GONUTS page

[PMID:10588066-2] 2.0 ^2.1 Frechilla, S et al. (1999) Stomata from npq1, a zeaxanthin-less Arabidopsis mutant, lack a specific response to blue light. Plant Cell Physiol. 40 949-54 PubMed GONUTS page

[PMID:11719511-3] Schubert, M et al. (2002) Proteome map of the chloroplast lumen of Arabidopsis thaliana. J. Biol. Chem. 277 8354-65 PubMed GONUTS page

[PMID:16258032-4] 4.0 ^4.1 Havaux, M et al. (2005) Vitamin E protects against photoinhibition and photooxidative stress in Arabidopsis thaliana. Plant Cell 17 3451-69 PubMed GONUTS page

[PMID:20061580-5] Ferro, M et al. (2010) AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Mol. Cell Proteomics 9 1063-84 PubMed GONUTS page

[PMID:18431481-6] Zybailov, B et al. (2008) Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. PLoS ONE 3 e1994 PubMed GONUTS page

[PMID:15923322-7] Larkindale, J et al. (2005) Heat stress phenotypes of Arabidopsis mutants implicate multiple signaling pathways in the acquisition of thermotolerance. Plant Physiol. 138 882-97 PubMed GONUTS page

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ARATH:VDE

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