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ARATH:SSDH
Contents
Species (Taxon ID) | Arabidopsis thaliana (Mouse-ear cress). (3702) | |
Gene Name(s) | ALDH5F1 (synonyms: SSADH1) | |
Protein Name(s) | Succinate-semialdehyde dehydrogenase, mitochondrial
At-SSADH1 Aldehyde dehydrogenase family 5 member F1 NAD(+)-dependent succinic semialdehyde dehydrogenase | |
External Links | ||
UniProt | Q9SAK4 | |
EMBL | AF117335 AC007202 CP002684 AF428367 AY056147 | |
PIR | E96825 | |
RefSeq | NP_178062.1 | |
UniGene | At.11884 | |
ProteinModelPortal | Q9SAK4 | |
SMR | Q9SAK4 | |
STRING | 3702.AT1G79440.1-P | |
PaxDb | Q9SAK4 | |
PRIDE | Q9SAK4 | |
EnsemblPlants | AT1G79440.1 | |
GeneID | 844282 | |
KEGG | ath:AT1G79440 | |
GeneFarm | 4340 | |
TAIR | AT1G79440 | |
eggNOG | COG1012 | |
HOGENOM | HOG000271509 | |
InParanoid | Q9SAK4 | |
KO | K17761 | |
OMA | IKYICMS | |
PhylomeDB | Q9SAK4 | |
BioCyc | ARA:AT1G79440-MONOMER | |
Reactome | REACT_190919 | |
UniPathway | UPA00733 | |
PRO | PR:Q9SAK4 | |
Proteomes | UP000006548 | |
Genevestigator | Q9SAK4 | |
GO | GO:0009507 GO:0009570 GO:0005759 GO:0005739 GO:0005507 GO:0051287 GO:0004777 GO:0009013 GO:0009450 GO:0006540 GO:0072593 GO:0009408 GO:0009416 | |
Gene3D | 3.40.309.10 3.40.605.10 | |
InterPro | IPR016161 IPR016163 IPR016160 IPR029510 IPR016162 IPR015590 IPR010102 | |
Pfam | PF00171 | |
SUPFAM | SSF53720 | |
TIGRFAMs | TIGR01780 | |
PROSITE | PS00070 PS00687 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0004777 |
succinate-semialdehyde dehydrogenase (NAD+) activity |
ECO:0000247 |
|
F |
Figure 1 |
complete | ||||
GO:0004777 |
succinate-semialdehyde dehydrogenase (NAD+) activity |
ECO:0000247 |
|
F |
Figure 1 |
complete | ||||
GO:0004777 |
succinate-semialdehyde dehydrogenase (NAD+) activity |
ECO:0000247 |
|
F |
Figure 1 |
complete | ||||
involved_in |
GO:0010492 |
maintenance of shoot apical meristem identity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1902074 |
response to salt |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0048825 |
cotyledon development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0048366 |
leaf development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009943 |
adaxial/abaxial axis specification |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009409 |
response to cold |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009416 |
response to light stimulus |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0004777 |
succinate-semialdehyde dehydrogenase (NAD+) activity |
ECO:0000247 |
sequence alignment evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004777 |
succinate-semialdehyde dehydrogenase (NAD+) activity |
ECO:0000247 |
sequence alignment evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004777 |
succinate-semialdehyde dehydrogenase (NAD+) activity |
ECO:0000247 |
sequence alignment evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0072593 |
reactive oxygen species metabolic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0051287 |
NAD binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0009570 |
chloroplast stroma |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0009507 |
chloroplast |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009450 |
gamma-aminobutyric acid catabolic process |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009416 |
response to light stimulus |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009408 |
response to heat |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006540 |
glutamate decarboxylation to succinate |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006540 |
glutamate decarboxylation to succinate |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005759 |
mitochondrial matrix |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0005507 |
copper ion binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004777 |
succinate-semialdehyde dehydrogenase (NAD+) activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004777 |
succinate-semialdehyde dehydrogenase (NAD+) activity |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
Missing: with/from | |||
enables |
GO:0009013 |
succinate-semialdehyde dehydrogenase [NAD(P)+] activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11329 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0004777 |
succinate-semialdehyde dehydrogenase (NAD+) activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11329 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0009013 |
succinate-semialdehyde dehydrogenase [NAD(P)+] activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009450 |
gamma-aminobutyric acid catabolic process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0016491 |
oxidoreductase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR015590 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0055114 |
oxidation-reduction process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR010102 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0004777 |
succinate-semialdehyde dehydrogenase (NAD+) activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0016491 |
oxidoreductase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0055114 |
oxidation-reduction process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005759 |
mitochondrial matrix |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009450 |
gamma-aminobutyric acid catabolic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniPathway:UPA00733 |
P |
Seeded From UniProt |
complete | ||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 Busch, KB & Fromm, H (1999) Plant succinic semialdehyde dehydrogenase. Cloning, purification, localization in mitochondria, and regulation by adenine nucleotides. Plant Physiol. 121 589-97 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 Toyokura, K et al. (2011) Succinic semialdehyde dehydrogenase is involved in the robust patterning of Arabidopsis leaves along the adaxial-abaxial axis. Plant Cell Physiol. 52 1340-53 PubMed GONUTS page
- ↑ Renault, H et al. (2010) The Arabidopsis pop2-1 mutant reveals the involvement of GABA transaminase in salt stress tolerance. BMC Plant Biol. 10 20 PubMed GONUTS page
- ↑ Kaplan, F et al. (2007) Transcript and metabolite profiling during cold acclimation of Arabidopsis reveals an intricate relationship of cold-regulated gene expression with modifications in metabolite content. Plant J. 50 967-81 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 Fait, A et al. (2005) GABA shunt deficiencies and accumulation of reactive oxygen intermediates: insight from Arabidopsis mutants. FEBS Lett. 579 415-20 PubMed GONUTS page
- ↑ Busch, K et al. (2000) Plant succinic semialdehyde dehydrogenase: dissection of nucleotide binding by surface plasmon resonance and fluorescence spectroscopy. Biochemistry 39 10110-7 PubMed GONUTS page
- ↑ Ferro, M et al. (2010) AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Mol. Cell Proteomics 9 1063-84 PubMed GONUTS page
- ↑ Zybailov, B et al. (2008) Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. PLoS ONE 3 e1994 PubMed GONUTS page
- ↑ 9.0 9.1 Bouché, N et al. (2003) Mitochondrial succinic-semialdehyde dehydrogenase of the gamma-aminobutyrate shunt is required to restrict levels of reactive oxygen intermediates in plants. Proc. Natl. Acad. Sci. U.S.A. 100 6843-8 PubMed GONUTS page
- ↑ Heazlewood, JL et al. (2004) Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Plant Cell 16 241-56 PubMed GONUTS page
- ↑ Millar, AH et al. (2001) Analysis of the Arabidopsis mitochondrial proteome. Plant Physiol. 127 1711-27 PubMed GONUTS page
- ↑ Tan, YF et al. (2010) Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Plant Physiol. 152 747-61 PubMed GONUTS page
- ↑ 13.0 13.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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