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ARATH:SMU1
Contents
| Species (Taxon ID) | Arabidopsis thaliana (Mouse-ear cress). (3702) | |
| Gene Name(s) | SMU1 | |
| Protein Name(s) | Suppressor of mec-8 and unc-52 protein homolog 1
AtSMU-1 RNA splicing protein SMU1 WD40 repeat-containing protein SMU1 | |
| External Links | ||
| UniProt | Q8W117 | |
| EMBL | AC012679 CP002684 AF462796 AY102129 | |
| PIR | D96764 | |
| RefSeq | NP_177513.2 | |
| UniGene | At.27865 | |
| ProteinModelPortal | Q8W117 | |
| SMR | Q8W117 | |
| BioGrid | 28926 | |
| IntAct | Q8W117 | |
| STRING | 3702.AT1G73720.1 | |
| PaxDb | Q8W117 | |
| EnsemblPlants | AT1G73720.1 | |
| GeneID | 843707 | |
| Gramene | AT1G73720.1 | |
| KEGG | ath:AT1G73720 | |
| Araport | AT1G73720 | |
| TAIR | locus:2027749 | |
| eggNOG | KOG0275 ENOG410XP39 | |
| HOGENOM | HOG000264846 | |
| InParanoid | Q8W117 | |
| KO | K13111 | |
| OMA | YQADETF | |
| OrthoDB | EOG0936066Y | |
| PhylomeDB | Q8W117 | |
| PRO | PR:Q8W117 | |
| Proteomes | UP000006548 | |
| ExpressionAtlas | Q8W117 | |
| Genevisible | Q8W117 | |
| GO | GO:0080008 GO:0005634 GO:0008380 | |
| Gene3D | 2.130.10.10 | |
| InterPro | IPR006595 IPR020472 IPR006594 IPR015943 IPR001680 IPR019775 IPR017986 | |
| Pfam | PF00400 | |
| PRINTS | PR00320 | |
| SMART | SM00668 SM00667 SM00320 | |
| SUPFAM | SSF50978 | |
| PROSITE | PS50897 PS50896 PS00678 PS50082 PS50294 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0008380 |
RNA splicing |
Q8W117:Q8W117 |
ECO:0000314 |
P |
SMU1 acts as suppressor to mec-8 and as a suppressor to unc-52. |
complete | ||||
|
part_of |
GO:0080008 |
Cul4-RING E3 ubiquitin ligase complex |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
AGI_LocusCode:AT4G15900 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0008380 |
RNA splicing |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0008380 |
RNA splicing |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0008380 |
RNA splicing |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000522536 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0038666 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0008380 |
RNA splicing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005681 |
spliceosomal complex |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006397 |
mRNA processing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Lee, JH et al. (2008) Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. Plant Cell 20 152-67 PubMed GONUTS page
- ↑ Kanno, T et al. (2017) A genetic screen implicates a CWC16/Yju2/CCDC130 protein and SMU1 in alternative splicing in . RNA 23 1068-1079 PubMed GONUTS page
- ↑ 3.0 3.1 Chung, T et al. (2009) Plant SMU-1 and SMU-2 homologues regulate pre-mRNA splicing and multiple aspects of development. Plant Physiol. 151 1498-512 PubMed GONUTS page
- ↑ 4.0 4.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
